Difference between revisions of "WebDev 2010.04.07-Agenda and Minutes"
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== 2. GB2 production discussion (Todd; 5 minutes) == | == 2. GB2 production discussion (Todd; 5 minutes) == | ||
− | * Small | + | * Small Render farm running now |
− | * Performance seems pretty good, LS noted some quirks with zombie processes | + | * Performance seems pretty good, LS noted some quirks with zombie processes (These do not come up in modENCODE), suggested possible error in fastCGI implementation. |
− | * XS added some | + | * XS added some improvements |
* config files discussed | * config files discussed | ||
Line 17: | Line 17: | ||
* build ongoing -- GFF files in | * build ongoing -- GFF files in | ||
* builds of late have been slowed by acedb slowdowns | * builds of late have been slowed by acedb slowdowns | ||
+ | * experimentation with MySQL compression (TH) | ||
== 4. Discuss WormMart status (all; 10 minutes) == | == 4. Discuss WormMart status (all; 10 minutes) == | ||
− | + | Current Server & Builds | |
new server | new server | ||
+ | |||
+ | * Fixed CSHL server (TH); some problem with WS200 db | ||
new builds | new builds | ||
+ | |||
+ | * AC trouble shooting | ||
+ | * Working on WS205 | ||
+ | * Will test WS200 | ||
+ | * Question about skipping problematic genes? | ||
== 5. modENCODE data migration status (Abby, Xq; 10 minutes) == | == 5. modENCODE data migration status (Abby, Xq; 10 minutes) == | ||
Line 36: | Line 44: | ||
documentation: | documentation: | ||
http://www.wormbase.org/wiki/index.php/Brute_force_-_modencode_migration | http://www.wormbase.org/wiki/index.php/Brute_force_-_modencode_migration | ||
+ | |||
+ | * AC -- Henikoff, working pretty well; running into caching issues with the other two. | ||
+ | * LS -- Wig to Bigwig file development | ||
+ | * TH -- Reset remote renderer to localhost | ||
== 6. Revisit April Milestone progress (all; 10 minutes) == | == 6. Revisit April Milestone progress (all; 10 minutes) == | ||
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* no hits display | * no hits display | ||
* asynchronous interface prototype. Tabs? Accordion? Selectable? | * asynchronous interface prototype. Tabs? Accordion? Selectable? | ||
− | * search for page that isn't there (LS) | + | * search for page that isn't there (LS suggestion) |
− | * page suggestions (LS) | + | * page suggestions (LS suggestion) |
− | * XML (LS) | + | * XML (LS suggestion) |
* Javascript Lib? | * Javascript Lib? | ||
* CSS development | * CSS development |
Latest revision as of 16:52, 7 April 2010
Contents
- 1 Agenda
- 1.1 1. Administrative Update (Todd; 5 minutes)
- 1.2 2. GB2 production discussion (Todd; 5 minutes)
- 1.3 3. Discuss WS213 update progress (Norie; 5 minutes)
- 1.4 4. Discuss WormMart status (all; 10 minutes)
- 1.5 5. modENCODE data migration status (Abby, Xq; 10 minutes)
- 1.6 6. Revisit April Milestone progress (all; 10 minutes)
Agenda
1. Administrative Update (Todd; 5 minutes)
- WS212 is in production
- Some fixes will be out with WS213
2. GB2 production discussion (Todd; 5 minutes)
- Small Render farm running now
- Performance seems pretty good, LS noted some quirks with zombie processes (These do not come up in modENCODE), suggested possible error in fastCGI implementation.
- XS added some improvements
- config files discussed
3. Discuss WS213 update progress (Norie; 5 minutes)
- build ongoing -- GFF files in
- builds of late have been slowed by acedb slowdowns
- experimentation with MySQL compression (TH)
4. Discuss WormMart status (all; 10 minutes)
Current Server & Builds
new server
- Fixed CSHL server (TH); some problem with WS200 db
new builds
- AC trouble shooting
- Working on WS205
- Will test WS200
- Question about skipping problematic genes?
5. modENCODE data migration status (Abby, Xq; 10 minutes)
dev: (Henikoff) http://dev.wormbase.org/gb2/gbrowse/c_elegans/
production: (Henikoff & Lieb - still working on this) http://wormbase.org/db/gb2/gbrowse/c_elegans/
documentation: http://www.wormbase.org/wiki/index.php/Brute_force_-_modencode_migration
- AC -- Henikoff, working pretty well; running into caching issues with the other two.
- LS -- Wig to Bigwig file development
- TH -- Reset remote renderer to localhost
6. Revisit April Milestone progress (all; 10 minutes)
Proposed Milestones
Expand database connectivity and make it more robust (Xq)
- Failover
- Additional GFF DB support
Finish and polish the prototype page report (all)
- basic/advanced search interface
- multiple hits display
- no hits display
- asynchronous interface prototype. Tabs? Accordion? Selectable?
- search for page that isn't there (LS suggestion)
- page suggestions (LS suggestion)
- XML (LS suggestion)
- Javascript Lib?
- CSS development
API for Sequence, Protein, Clone, Variation, Strain (overseen by Norie with help from all)
- draw from Gene.pm experience.
- perform analysis on needed assistance -- will list.
Public demo site (Todd)
- Backups
- Nightly builds
Widget/Page level caching (Todd)
To consider:
- maintenance interface
- debugging / logging
- performance metrics
- caching / cloud layer