WebDev 2009.10.07-Agenda and Minutes
From WormBaseWiki
Contents
Agenda
1. Administration update (Todd; 10 minutes)
- Moved CVS repository to OICR, test out
- Checks on individual development sites - issues with GBrowse images; Some peculiar Firefox browser issues observed for Xiaoqi's individual site
- Production servers @ OICR set-up; contains 15 frozen releases
- Datamining servers to be moved to OICR as well.
2. WS207 update / pipeline notes (Norie; 10 minutes)
- Orthology and ontology compilations
- Working with LoadGFFDB
- GFF2-based genomes are loaded
- Orthology data now being loaded
- Bug with some of the compiled data
- Analysis for additions to the paralog page
3. Pathways/processes visualization (Xiaoqi; 10 minutes)
- working with Ant on display
- Sent Karen the appropriate code for their collaboration
- Aside: Discussion of BitBucket issue assignments and resolutions
4. modENCODE and general development update (Abby; 10 minutes)
- Analysis of Watterston and RNASeq data sets for GBrowse; getting assistance from Peter
- Discussion of data formats and Sand (sp?) Tools
- TH: Good to make this available soon; curators are already using this data to correct gene models
- Use unvetted data per TH, these are the most recent
- Working of "rsync-ing" to data to expedite access
- Operon page - up for review. Will email web-dev.
5. Define Mart schedule (Zheng; 10 minutes)
6. Open Table
* Questions re: Chado and WB. Chado DB populated for modEncode effort with some AceDB data.