WebDev 2009.10.07-Agenda and Minutes

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1. Administration update (Todd; 10 minutes)

  • Moved CVS repository to OICR, test out
  • Checks on individual development sites - issues with GBrowse images; Some peculiar Firefox browser issues observed for Xiaoqi's individual site
  • Production servers @ OICR set-up; contains 15 frozen releases
  • Datamining servers to be moved to OICR as well.

2. WS207 update / pipeline notes (Norie; 10 minutes)

  • Orthology and ontology compilations
  • Working with LoadGFFDB
  • GFF2-based genomes are loaded
  • Orthology data now being loaded
  • Bug with some of the compiled data
  • Analysis for additions to the paralog page

3. Pathways/processes visualization (Xiaoqi; 10 minutes)

  • working with Ant on display
  • Sent Karen the appropriate code for their collaboration
  • Aside: Discussion of BitBucket issue assignments and resolutions

4. modENCODE and general development update (Abby; 10 minutes)

  • Analysis of Watterston and RNASeq data sets for GBrowse; getting assistance from Peter
  • Discussion of data formats and Sand (sp?) Tools
  • TH: Good to make this available soon; curators are already using this data to correct gene models
  • Use unvetted data per TH, these are the most recent
  • Working of "rsync-ing" to data to expedite access
  • Operon page - up for review. Will email web-dev.

5. Define Mart schedule (Zheng; 10 minutes)

6. Open Table

  • Questions re: Chado and WB. Chado DB populated for modEncode effort with some AceDB data.