Difference between revisions of "WebDev 2009.10.07-Agenda and Minutes"
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== 1. Administration update (Todd; 10 minutes) == | == 1. Administration update (Todd; 10 minutes) == | ||
− | + | * Moved CVS repository to OICR, test out | |
− | + | * Checks on individual development sites - issues with GBrowse images; Some peculiar Firefox browser issues observed for Xiaoqi's individual site | |
− | + | * Production servers @ OICR set-up; contains 15 frozen releases | |
− | + | * Datamining servers to be moved to OICR as well. | |
== 2. WS207 update / pipeline notes (Norie; 10 minutes) == | == 2. WS207 update / pipeline notes (Norie; 10 minutes) == | ||
+ | |||
+ | * Orthology and ontology compilations | ||
+ | * Working with LoadGFFDB | ||
+ | * GFF2-based genomes are loaded | ||
+ | * Orthology data now being loaded | ||
+ | * Bug with some of the compiled data | ||
+ | * Analysis for additions to the paralog page | ||
== 3. Pathways/processes visualization (Xiaoqi; 10 minutes) == | == 3. Pathways/processes visualization (Xiaoqi; 10 minutes) == | ||
+ | |||
+ | |||
+ | * working with Ant on display | ||
+ | * Sent Karen the appropriate code for their collaboration | ||
+ | * Aside: Discussion of BitBucket issue assignments and resolutions | ||
+ | * | ||
== 4. modENCODE and general development update (Abby; 10 minutes) == | == 4. modENCODE and general development update (Abby; 10 minutes) == | ||
+ | |||
+ | * Analysis of Watterston and RNASeq data sets for GBrowse; getting assistance from Peter | ||
+ | * Discussion of data formats and Sand (sp?) Tools | ||
+ | * TH: Good to make this available soon; curators are already using this data to correct gene models | ||
+ | * Use unvetted data per TH, these are the most recent | ||
+ | * Working of "rsync-ing" to data to expedite access | ||
+ | * Operon page - up for review. Will email web-dev. | ||
== 5. Define Mart schedule (Zheng; 10 minutes) == | == 5. Define Mart schedule (Zheng; 10 minutes) == | ||
== 6. Open Table == | == 6. Open Table == | ||
+ | |||
+ | * Questions re: Chado and WB. Chado DB populated for modEncode effort with some AceDB data. |
Latest revision as of 16:53, 7 October 2009
Contents
Agenda
1. Administration update (Todd; 10 minutes)
- Moved CVS repository to OICR, test out
- Checks on individual development sites - issues with GBrowse images; Some peculiar Firefox browser issues observed for Xiaoqi's individual site
- Production servers @ OICR set-up; contains 15 frozen releases
- Datamining servers to be moved to OICR as well.
2. WS207 update / pipeline notes (Norie; 10 minutes)
- Orthology and ontology compilations
- Working with LoadGFFDB
- GFF2-based genomes are loaded
- Orthology data now being loaded
- Bug with some of the compiled data
- Analysis for additions to the paralog page
3. Pathways/processes visualization (Xiaoqi; 10 minutes)
- working with Ant on display
- Sent Karen the appropriate code for their collaboration
- Aside: Discussion of BitBucket issue assignments and resolutions
4. modENCODE and general development update (Abby; 10 minutes)
- Analysis of Watterston and RNASeq data sets for GBrowse; getting assistance from Peter
- Discussion of data formats and Sand (sp?) Tools
- TH: Good to make this available soon; curators are already using this data to correct gene models
- Use unvetted data per TH, these are the most recent
- Working of "rsync-ing" to data to expedite access
- Operon page - up for review. Will email web-dev.
5. Define Mart schedule (Zheng; 10 minutes)
6. Open Table
- Questions re: Chado and WB. Chado DB populated for modEncode effort with some AceDB data.