WebDev 2009.07.29-Agenda and Minutes
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Revision as of 10:31, 29 July 2009 by Tharris (talk | contribs) (→4. modENCODE update (Peter, Zheng; 10 minutes))
Contents
Agenda
1. Minutes
2. Administration update (Todd; 5 minutes)
3. Development update Matrix (Norie; 10 minutes)
- Gff2 -> GFF3 pipeline
- Test with Pristionchus pacificus
- WS204
- PMap is built
- GMap is built
- TH: Atomic level checks: how to test that something is successful?
- TH: Clone for every release, so that we have a checklist for each release, at a glance progress of build
- TH: Link to spreadsheet from the release notes on the wiki,
4. modENCODE update (Peter, Zheng; 10 minutes)
Peter:
- New data; released some Waterston tracks - 17 submissions
- Tiling array data.
- Expression data: C. elegans grown in presence of pathogens
- GBrowse updates
- For each track in details, red rectangles with question mark; hover shows citations
- Citation is truncated
- For each track in details, red rectangles with question mark; hover shows citations
- DataSource module in GB2.
- Extract information from data sources
Zheng:
- WormMart
- GO error when generating meta tables for BioMart: corrected
- Web Interface
- Martview: builds interface
- One sheet of filters and attributes
- Current Mart interface has many attributes omitted
Todo: Transform interface
TH: Going forward, how is the build process?
- ZZ: Requires some attention; will do with WS204 and report required time*