Difference between revisions of "WebDev 2009.07.29-Agenda and Minutes"

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(New page: = Agenda = == 1. Minutes == == 2. Administration update (Todd; 5 minutes) == == 3. Development update Matrix (Norie; 10 minutes) == == 4. modENCODE update (Peter, Zheng; 10 minutes) ==...)
 
 
(4 intermediate revisions by the same user not shown)
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== 2. Administration update (Todd; 5 minutes) ==
 
== 2. Administration update (Todd; 5 minutes) ==
 +
 +
* Restructured topology of production
 +
* Big Iron failure yesterday, work-arounds in place
 +
* Working with PvB to create list of services and hardware; TH putting production migration plan in place
  
 
== 3. Development update Matrix (Norie; 10 minutes) ==
 
== 3. Development update Matrix (Norie; 10 minutes) ==
 +
 +
* Gff2 -> GFF3 pipeline
 +
 +
* Test with Pristionchus pacificus
 +
* WS204
 +
** PMap is built
 +
** GMap is built
 +
 +
* TH: Atomic level checks: how to test that something is successful?
 +
* TH: Clone for every release, so that we have a checklist for each release, at a glance progress of build
 +
* TH: Link to spreadsheet from the release notes on the wiki,
  
 
== 4. modENCODE update (Peter, Zheng; 10 minutes) ==
 
== 4. modENCODE update (Peter, Zheng; 10 minutes) ==
 +
 +
Peter:
 +
 +
* New data; released some Waterston tracks - 17 submissions
 +
* Tiling array data.
 +
 +
* Expression data: C. elegans grown in presence of pathogens
 +
* GBrowse updates
 +
** For each track in details, red rectangles with question mark; hover shows citations
 +
*** Citation is truncated
 +
 +
* DataSource module in GB2.
 +
** Extract information from data sources
 +
 +
 +
Zheng:
 +
* WormMart
 +
** GO error when generating meta tables for BioMart: corrected
 +
** Web Interface
 +
*** Martview: builds interface
 +
*** One sheet of filters and attributes
 +
*** Current Mart interface has many attributes omitted
 +
 +
Todo: Transform interface
 +
 +
TH: Going forward, how is the build process?
 +
*ZZ: Requires some attention; will do with WS204 and report required time*
  
 
== Open Table ==
 
== Open Table ==

Latest revision as of 10:43, 29 July 2009

Agenda

1. Minutes

2. Administration update (Todd; 5 minutes)

  • Restructured topology of production
  • Big Iron failure yesterday, work-arounds in place
  • Working with PvB to create list of services and hardware; TH putting production migration plan in place

3. Development update Matrix (Norie; 10 minutes)

  • Gff2 -> GFF3 pipeline
  • Test with Pristionchus pacificus
  • WS204
    • PMap is built
    • GMap is built
  • TH: Atomic level checks: how to test that something is successful?
  • TH: Clone for every release, so that we have a checklist for each release, at a glance progress of build
  • TH: Link to spreadsheet from the release notes on the wiki,

4. modENCODE update (Peter, Zheng; 10 minutes)

Peter:

  • New data; released some Waterston tracks - 17 submissions
  • Tiling array data.
  • Expression data: C. elegans grown in presence of pathogens
  • GBrowse updates
    • For each track in details, red rectangles with question mark; hover shows citations
      • Citation is truncated
  • DataSource module in GB2.
    • Extract information from data sources


Zheng:

  • WormMart
    • GO error when generating meta tables for BioMart: corrected
    • Web Interface
      • Martview: builds interface
      • One sheet of filters and attributes
      • Current Mart interface has many attributes omitted

Todo: Transform interface

TH: Going forward, how is the build process?

  • ZZ: Requires some attention; will do with WS204 and report required time*

Open Table

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