Difference between revisions of "WebDev 2009.07.29-Agenda and Minutes"
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== 2. Administration update (Todd; 5 minutes) == | == 2. Administration update (Todd; 5 minutes) == | ||
+ | |||
+ | * Restructured topology of production | ||
+ | * Big Iron failure yesterday, work-arounds in place | ||
+ | * Working with PvB to create list of services and hardware; TH putting production migration plan in place | ||
== 3. Development update Matrix (Norie; 10 minutes) == | == 3. Development update Matrix (Norie; 10 minutes) == | ||
* Gff2 -> GFF3 pipeline | * Gff2 -> GFF3 pipeline | ||
+ | |||
* Test with Pristionchus pacificus | * Test with Pristionchus pacificus | ||
* WS204 | * WS204 | ||
Line 14: | Line 19: | ||
* TH: Atomic level checks: how to test that something is successful? | * TH: Atomic level checks: how to test that something is successful? | ||
− | * TH: | + | * TH: Clone for every release, so that we have a checklist for each release, at a glance progress of build |
+ | * TH: Link to spreadsheet from the release notes on the wiki, | ||
== 4. modENCODE update (Peter, Zheng; 10 minutes) == | == 4. modENCODE update (Peter, Zheng; 10 minutes) == | ||
+ | |||
+ | Peter: | ||
+ | |||
+ | * New data; released some Waterston tracks - 17 submissions | ||
+ | * Tiling array data. | ||
+ | |||
+ | * Expression data: C. elegans grown in presence of pathogens | ||
+ | * GBrowse updates | ||
+ | ** For each track in details, red rectangles with question mark; hover shows citations | ||
+ | *** Citation is truncated | ||
+ | |||
+ | * DataSource module in GB2. | ||
+ | ** Extract information from data sources | ||
+ | |||
+ | |||
+ | Zheng: | ||
+ | * WormMart | ||
+ | ** GO error when generating meta tables for BioMart: corrected | ||
+ | ** Web Interface | ||
+ | *** Martview: builds interface | ||
+ | *** One sheet of filters and attributes | ||
+ | *** Current Mart interface has many attributes omitted | ||
+ | |||
+ | Todo: Transform interface | ||
+ | |||
+ | TH: Going forward, how is the build process? | ||
+ | *ZZ: Requires some attention; will do with WS204 and report required time* | ||
== Open Table == | == Open Table == |
Latest revision as of 10:43, 29 July 2009
Contents
Agenda
1. Minutes
2. Administration update (Todd; 5 minutes)
- Restructured topology of production
- Big Iron failure yesterday, work-arounds in place
- Working with PvB to create list of services and hardware; TH putting production migration plan in place
3. Development update Matrix (Norie; 10 minutes)
- Gff2 -> GFF3 pipeline
- Test with Pristionchus pacificus
- WS204
- PMap is built
- GMap is built
- TH: Atomic level checks: how to test that something is successful?
- TH: Clone for every release, so that we have a checklist for each release, at a glance progress of build
- TH: Link to spreadsheet from the release notes on the wiki,
4. modENCODE update (Peter, Zheng; 10 minutes)
Peter:
- New data; released some Waterston tracks - 17 submissions
- Tiling array data.
- Expression data: C. elegans grown in presence of pathogens
- GBrowse updates
- For each track in details, red rectangles with question mark; hover shows citations
- Citation is truncated
- For each track in details, red rectangles with question mark; hover shows citations
- DataSource module in GB2.
- Extract information from data sources
Zheng:
- WormMart
- GO error when generating meta tables for BioMart: corrected
- Web Interface
- Martview: builds interface
- One sheet of filters and attributes
- Current Mart interface has many attributes omitted
Todo: Transform interface
TH: Going forward, how is the build process?
- ZZ: Requires some attention; will do with WS204 and report required time*