Difference between revisions of "WebDev 2009.06.03-Agenda and Minutes"
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Agenda | Agenda | ||
− | + | == Administrative update (Todd, 5 minutes)== | |
− | + | WS202 rollout; power failures at CSHL; all services restored. | |
− | + | == Describe GFF2 -> GFF3 progress and define deadline (Norie, 10 minutes)== | |
− | * | + | * '''Norie will have something by Friday'''. |
+ | * Will email Erich and Todd, and commit changes back to repository. | ||
+ | * Add GFF validation step (there are some problems with children with no parents in WS180 GFF3) | ||
+ | * Contact Peter when GFF3 is available | ||
− | * modENCODE status update (Marc, Peter, Zheng, 10 minutes) | + | == Discuss WormMart handling and maintenance (10 minutes)== |
+ | * Zheng is running it on server at OICR: res.oicr.on.ca | ||
+ | * We Will plan to add to update pipeline shortly. | ||
+ | * TH: Is there a 'Mart installation at OICR? eg: Can we host WormMart ion existing infrastrucutre? | ||
+ | * LS: Load data into Arek's existing, externally available BioMart | ||
+ | ** Arek has dedicated existing mysql database and loads of capacity | ||
+ | ** '''Zheng will talk with Arek about hosting''' | ||
+ | |||
+ | == Job candidates and schedule (10 minutes)== | ||
+ | |||
+ | * Scheduling interviews for later this week and next | ||
+ | |||
+ | == modENCODE status update (Marc, Peter, Zheng, 10 minutes)== | ||
+ | |||
+ | * Zheng: scripted GEO fetching | ||
+ | * Peter: Working with LaDeana Hillier's data, this will be available on WormBase shortly. | ||
+ | |||
+ | http://modencode.oicr.on.ca/~pruzanov/cgi-bin/gbrowse/worm/?start=110643;stop=112642;ref=I;width=800;version=100;drag_and_drop=on;show_tooltips=on;grid=on;id=d6fffa28235f2a8d6befe1b569019800;label=Genes-rainbow_genelet_L2-rainbow_transcript_L2-rainbow_genelet_L3-rainbow_transcript_L3-rainbow_genelet_L4-rainbow_transcript_L4-rainbow_genelet_YA-rainbow_transcript_YA | ||
+ | |||
+ | * TH: exec function? | ||
+ | ** LS: Executes script everytime config is parsed. If not cached, will fetch tracks from modencode, set to reload every hour. | ||
+ | |||
+ | *MP: Snyder project now has about a dozen datasets | ||
+ | |||
+ | * LS: GBrowse server farm at OICR: | ||
+ | |||
+ | Finished installing a browser server farm for modencode: gbrowse.modencode.oicr.on.ca | ||
+ | |||
+ | Load balancing system: 5 machines | ||
+ | Two front-end load-balancing machines of 8 cores each: load balancing and rendering | ||
+ | Two back-end machines of 8 cores each: rendering | ||
+ | Database server with NFS | ||
+ | |||
+ | * TH: will other OICR projects be able to use this architecture? | ||
+ | * LS: possibly ;) |
Latest revision as of 10:49, 3 June 2009
Agenda
Contents
Administrative update (Todd, 5 minutes)
WS202 rollout; power failures at CSHL; all services restored.
Describe GFF2 -> GFF3 progress and define deadline (Norie, 10 minutes)
- Norie will have something by Friday.
- Will email Erich and Todd, and commit changes back to repository.
- Add GFF validation step (there are some problems with children with no parents in WS180 GFF3)
- Contact Peter when GFF3 is available
Discuss WormMart handling and maintenance (10 minutes)
- Zheng is running it on server at OICR: res.oicr.on.ca
- We Will plan to add to update pipeline shortly.
- TH: Is there a 'Mart installation at OICR? eg: Can we host WormMart ion existing infrastrucutre?
- LS: Load data into Arek's existing, externally available BioMart
- Arek has dedicated existing mysql database and loads of capacity
- Zheng will talk with Arek about hosting
Job candidates and schedule (10 minutes)
- Scheduling interviews for later this week and next
modENCODE status update (Marc, Peter, Zheng, 10 minutes)
- Zheng: scripted GEO fetching
- Peter: Working with LaDeana Hillier's data, this will be available on WormBase shortly.
- TH: exec function?
- LS: Executes script everytime config is parsed. If not cached, will fetch tracks from modencode, set to reload every hour.
- MP: Snyder project now has about a dozen datasets
- LS: GBrowse server farm at OICR:
Finished installing a browser server farm for modencode: gbrowse.modencode.oicr.on.ca
Load balancing system: 5 machines Two front-end load-balancing machines of 8 cores each: load balancing and rendering Two back-end machines of 8 cores each: rendering Database server with NFS
- TH: will other OICR projects be able to use this architecture?
- LS: possibly ;)