WBConfCall 2023.05.04-Agenda and Minutes

From WormBaseWiki
Revision as of 17:22, 4 May 2023 by Jchan (talk | contribs) (→‎Name Server)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigationJump to search

Agenda and Minutes

HelpDesk

scRNA from Whole-body gene expression atlas of an adult metazoan

  • Web site https://wormseq.org/
  • Curatable data (need to decide what to take on)
    • Interactive graph TPM / % cell expressing per gene (planned)
    • Enriched gene set per cell (planned)
    • Link out to their web site and analysis tools (planned)
    • Inclusion on http://single-cell.wormbase.org/
      • if we have the files in .h5ad format we can try to set it up
    • Likely house keeping genes
      • these could be brought in via expression cluster
    • Makers used for cell cluster ID
      • integrate into anatomy pages
    • Ligand-receptor expression informed cell-cell interaction
      • for this and the following items Hinton does not have enough manpower to deal with it
    • Transcription factor code per cell type
    • cis-acting sites for cell types

IWM

  • Booth
    • received this morning an email from the contractor for booth logistics
      • carpeting
      • electrical and extension cords
        • Stavros Sarah can bring some extension cords
      • furniture
        • Sarah and Stavros can bring camping chairs
  • Swag
  • Workshop
    • Scott will be remote
    • Check in with Todd if he can give the tools talk

Orthology

  • Alliance and WB results differ, that influences the gene descriptions
  • Need a manual assertion of homology using manually written concise descriptions?

Name Server

  • Any update on this, Todd?

Caltech server with WormBase name

Valerio will test, then write to Todd