Difference between revisions of "WBConfCall 2023.03.16-Agenda and Minutes"

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== New items ==
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* Paul brought up a discussion on adding new genomes/species to WormBase, including setting up Tier 1, 2 species. This discussion should be done in conjunction to WB's advisory board and meeting(s) should be scheduled in order for the conversations and plan to be defined.

Latest revision as of 16:18, 16 March 2023

Agenda

Help Desk

1. Cristian Riccio (Miska Lab): whole genome assemblies of 18 wild isolates. Should we host? 

 - Sarah contacted Cristian, who works in Cambridge and she will provide more information. One option is to provide JBrowse tracks.

IWM 2023

  • Who is going?
- Roster will be created to line up speakers, presentations, etc. 
- Pre registration is May 2nd'
- travel funds were discussed

Alliance/Caltech Literature

  • Caltech created a parallel PubMed search pipeline and paper editor UI for WormBase Parasite
  • Is this still being used?
 - Discussion was what should be done with the Lit. branch for ParaSite. Dionysis will take a look and discuss with Kimberly.

Grants for AI/ML Readiness of Data

- NIH/NLM provide supplements for making data FAIR or ready for AI/ML ingestion, and proposals can be quite open and broad as there's no consensus from the funding agencies on what is the best approach. Gene ontology seems like a good initial candidate.

- Other MODs can also work on getting supplemental funding

Bob Waterston single cell data

  • Data on staging
  • Bob said it looks great - also shared with his lab and John Murray
  • He asks if i)use log scale ii)display above CenGen and iii) if we want the L2 dataset from the 2017 paper in a similar format
- on i) there are dose discussions on how to setup a log display and some possibilities will be discussed and checked on the JS graphing library
- on ii) CenGen should be on top as it's the latests data available
- on iii) we might consider requesting the data and working on a similar display

More discussions:
  - labelling/values consistency with CenGen graphs
  - embryonic cell on top of lineage
  - display/link static images

New items

  • Paul brought up a discussion on adding new genomes/species to WormBase, including setting up Tier 1, 2 species. This discussion should be done in conjunction to WB's advisory board and meeting(s) should be scheduled in order for the conversations and plan to be defined.
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