Difference between revisions of "WBConfCall 2018.02.01-Agenda and Minutes"
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= Agenda = | = Agenda = | ||
+ | excused: Todd, Karen, Paolo | ||
+ | |||
== Open Helpdesk Tickets == | == Open Helpdesk Tickets == | ||
[https://github.com/WormBase/website/labels/HelpDesk Help Desk Tickets] | [https://github.com/WormBase/website/labels/HelpDesk Help Desk Tickets] | ||
− | |||
− | |||
== Advisory Board Meeting == | == Advisory Board Meeting == | ||
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== AGR == | == AGR == | ||
[http://www.alliancegenome.org/ AGR] | [http://www.alliancegenome.org/ AGR] | ||
+ | |||
+ | == New Starters == | ||
+ | * Wotjek Bazant (WormBase Parasite - Hinxton) | ||
+ | * April Jauhal (WormBase - Caltech) | ||
+ | |||
+ | == 'Single-Cell' Gene Expression data == | ||
+ | |||
+ | Who deals with what? | ||
= Minutes = | = Minutes = | ||
+ | == AGR == | ||
+ | === Interactions === | ||
+ | * Interaction Working Group is talking about getting WormBase data into AGR | ||
+ | * Import from external sources, a.e. IMAP(?) | ||
+ | * design of page/table to display the data on AGR (v2.0) | ||
+ | * planning to deal with redundancy in data in some way | ||
+ | ** similar problem to redundancy during GO curation | ||
+ | ** can we used as weight for edges | ||
+ | |||
+ | === Gene Expression === | ||
+ | * expression XRefs | ||
+ | ** design | ||
+ | ** implementation | ||
+ | ** display | ||
+ | ** submission | ||
+ | * overlap between Gene Regulation / Interaction needs coordination | ||
+ | |||
+ | === Disease === | ||
+ | * add back in orthology based gene - disease association (v1.3?) with difference evidence (IEA / ISO) | ||
+ | * different approaches between the databases for curation/prediction | ||
+ | * talk about an AGR wide orthology set for predicting disease genes | ||
+ | |||
+ | === Gene Descriptions === | ||
+ | * come up with AGR wide rules for Gene Descriptions | ||
+ | * rewrite the WB description pipeline | ||
+ | * differences between WB - AGR description (custom output?) | ||
+ | * outreach to labs / user feedback | ||
+ | == 'Single-Cell' Gene Expression data == | ||
+ | * coordination between CalTech and Hinxton (Gary, Raymond, Wen), due to the large scale analysis data | ||
+ | * ontology terms not necessary in line with WB |
Latest revision as of 18:30, 1 February 2018
Contents
Agenda
excused: Todd, Karen, Paolo
Open Helpdesk Tickets
Advisory Board Meeting
AGR
New Starters
- Wotjek Bazant (WormBase Parasite - Hinxton)
- April Jauhal (WormBase - Caltech)
'Single-Cell' Gene Expression data
Who deals with what?
Minutes
AGR
Interactions
- Interaction Working Group is talking about getting WormBase data into AGR
- Import from external sources, a.e. IMAP(?)
- design of page/table to display the data on AGR (v2.0)
- planning to deal with redundancy in data in some way
- similar problem to redundancy during GO curation
- can we used as weight for edges
Gene Expression
- expression XRefs
- design
- implementation
- display
- submission
- overlap between Gene Regulation / Interaction needs coordination
Disease
- add back in orthology based gene - disease association (v1.3?) with difference evidence (IEA / ISO)
- different approaches between the databases for curation/prediction
- talk about an AGR wide orthology set for predicting disease genes
Gene Descriptions
- come up with AGR wide rules for Gene Descriptions
- rewrite the WB description pipeline
- differences between WB - AGR description (custom output?)
- outreach to labs / user feedback
'Single-Cell' Gene Expression data
- coordination between CalTech and Hinxton (Gary, Raymond, Wen), due to the large scale analysis data
- ontology terms not necessary in line with WB