Difference between revisions of "WBConfCall 2014.02.06-Agenda and Minutes"
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== Models schedule == | == Models schedule == | ||
− | *Decide on WS243 upload date (Friday) | + | *Decide on WS243 upload date (Proposed Friday 28th March) |
− | *Models Tagging -2 weeks | + | *Models Tagging -2 weeks (14th March) |
− | *Models proposal deadline -3 weeks | + | *Models proposal deadline -3 weeks (7th March) |
Not tied to a call. | Not tied to a call. |
Revision as of 10:15, 6 February 2014
Contents
Agenda
New WormBase team member
Plans for WS243
- Topic curation for WS243 & WS244: Repsonse to Pathogens, Signaling in Innate Immunity
- Take papers and genes from two WormBook chapters:
- Interactions with microbial pathogens (2005) - Creg Darby
- Signaling in the immune response (2006) - Jonathan J. Ewbank
Upcoming Species
- Necator americanus <= WS242
- Pristionchus exspectatus
- Pristionchus pacificus <= waiting for ENA submission
- Romanomermis culicivorax <= ParaSite
- Trichuris suis
- Meloidogyne incognita
Models schedule
- Decide on WS243 upload date (Proposed Friday 28th March)
- Models Tagging -2 weeks (14th March)
- Models proposal deadline -3 weeks (7th March)
Not tied to a call.
Generating gene association files that conform to the GAF 2.0 format (Ranjana, Raymond)
- Gene association files (GAFs) are generated by Hinxton for GO, phenotype and anatomy data, but they currently don't conform to the GAF 2.0 format which is the industry standard, and required for the ontology browser that Raymond and Juancarlos are working on.
gene_association all good anatomy_association column 6 => "WB_REF:WBPaperDDDDDDDDD" column 9 => leave empty, no aspect choice for our anatomy ontology. column 12 => "gene" column 13 => "taxon:DDDD" phenotype_association same as anatomy
- We need to generate a GAF for gene-disease data (Ranjana and Paul D can talk offline about this)