Difference between revisions of "WBConfCall 2012.10.03-Agenda and Minutes"
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− | Agenda items WBConferenceCall 2012-10- | + | Agenda items WBConferenceCall 2012-10-04 |
− | == 1. == | + | == 1. Model changes (Hinxton) == |
+ | *Couple weeks before sign off | ||
+ | **Strain model - add Database connection | ||
+ | **Molecule model - add Paper XREF | ||
+ | *Any more model changes need to be brought up soon | ||
+ | *Potential change for Position Weight Matrix (to include data from Gary Stormo) - Xiaodong | ||
− | == 2. | + | == 2. Outstanding help desk issues == |
+ | |||
+ | *Recent e-mail regarding download of brief identification info from Batch Genes (in legacy) | ||
+ | **Asking about way to do this in new site | ||
+ | **Todd says this won't get ported until WS235 at the earliest | ||
+ | **Eventually to be handled by Intermine | ||
+ | *'Nearby Genes' search tool in legacy | ||
+ | **Can someone develop a query (AQL?) to address this | ||
+ | |||
+ | |||
+ | == 3. FlyBase SAB == | ||
+ | |||
+ | *FlyBase has some good data query tools | ||
+ | *Incorporating human disease relevance - trying to advertise their efforts to non-fly communities | ||
+ | *Use OrthoDB for orthology calls and relation to human genes | ||
+ | |||
+ | |||
+ | == 4. Human Disease == | ||
+ | |||
+ | *Mirror or link to GSA | ||
+ | *Paul will discuss human disease relations to model organisms at GO meeting at Caltech this weekend | ||
+ | |||
+ | |||
+ | == 5. SPELL for Tier II species == | ||
+ | |||
+ | *RNA-seq data is becoming available for Tier II species | ||
+ | *Can users download Tier II species (gene-centric) data from SPELL? | ||
+ | *Hinxton: only C. elegans SPELL-mapping data shows up on FTP server; what about Tier II? | ||
+ | *Raymond: once Gary Williams/Michael Paulini generate Tier II files for mapping, we can incorporate (next upload, WS235?) | ||
+ | *Tier II genes in SPELL could be linked to GBrowse, although no proper gene pages exist |
Revision as of 15:56, 4 October 2012
Agenda items WBConferenceCall 2012-10-04
Contents
1. Model changes (Hinxton)
- Couple weeks before sign off
- Strain model - add Database connection
- Molecule model - add Paper XREF
- Any more model changes need to be brought up soon
- Potential change for Position Weight Matrix (to include data from Gary Stormo) - Xiaodong
2. Outstanding help desk issues
- Recent e-mail regarding download of brief identification info from Batch Genes (in legacy)
- Asking about way to do this in new site
- Todd says this won't get ported until WS235 at the earliest
- Eventually to be handled by Intermine
- 'Nearby Genes' search tool in legacy
- Can someone develop a query (AQL?) to address this
3. FlyBase SAB
- FlyBase has some good data query tools
- Incorporating human disease relevance - trying to advertise their efforts to non-fly communities
- Use OrthoDB for orthology calls and relation to human genes
4. Human Disease
- Mirror or link to GSA
- Paul will discuss human disease relations to model organisms at GO meeting at Caltech this weekend
5. SPELL for Tier II species
- RNA-seq data is becoming available for Tier II species
- Can users download Tier II species (gene-centric) data from SPELL?
- Hinxton: only C. elegans SPELL-mapping data shows up on FTP server; what about Tier II?
- Raymond: once Gary Williams/Michael Paulini generate Tier II files for mapping, we can incorporate (next upload, WS235?)
- Tier II genes in SPELL could be linked to GBrowse, although no proper gene pages exist