Difference between revisions of "Vulval development"

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m (New page: http://www.wormbase.org/wiki/index.php/Process_Pages Processes index =Processes in vulval development in ''C. elegans''= ==Signaling pathways involved== ''(draw out in wikipathways ...)
 
 
(4 intermediate revisions by one other user not shown)
Line 1: Line 1:
 
[[http://www.wormbase.org/wiki/index.php/Process_Pages Processes index]]
 
[[http://www.wormbase.org/wiki/index.php/Process_Pages Processes index]]
  
−
=Processes in vulval development in ''C. elegans''=
+
=Vulval development in ''C. elegans''=
  
−
==Signaling pathways involved==  
+
==Signaling pathways==  
−
''(draw out in wikipathways and connect to reactome)''<br>
+
''(draw out in wikipathways, connect to reactome)''<br>
−
[WNT]
+
[http://www.wikipathways.org/index.php/Pathway:WP235 WNT]
 
[EGF]
 
[EGF]
−
[Notch]
+
[Notch]
  
−
==Processes==  
+
==Process steps==
 +
===Morphogenesis of ventral epithelia===
 
[[Generation of VPC's]]<br>
 
[[Generation of VPC's]]<br>
 
[[Vulval Precursor Patterning]] <br>
 
[[Vulval Precursor Patterning]] <br>
Line 15: Line 16:
 
[[Morphogenesis of the vulva]]<br>
 
[[Morphogenesis of the vulva]]<br>
 
[[Generation of the anchor cell: AC/UV decision]]<br>  
 
[[Generation of the anchor cell: AC/UV decision]]<br>  
 +
 +
===Morphogenesis of uterine epithelia===
 
[[Uterine patterning: pi cell induction]]<br>
 
[[Uterine patterning: pi cell induction]]<br>
 
[[Uterine patterning: uv1 induction]]<br>  
 
[[Uterine patterning: uv1 induction]]<br>  
Line 20: Line 23:
 
[[Patterning of adult cell types: Polarity of 2° lineage]]<br>
 
[[Patterning of adult cell types: Polarity of 2° lineage]]<br>
  
−
==Genes involved in vulval developement==
+
==Genes==  
−
{| {{table}}
+
''(from WBook chapter "Vulval development")''<br>
−
| align="center" style="background:#f0f0f0;"|'''Gene WB ID'''
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00000150;class=Gene apm-1],
−
| align="center" style="background:#f0f0f0;"|'''Gene Public Name'''
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00000168;class=Gene apx-1],
−
| align="center" style="background:#f0f0f0;"|'''GO ID (merged)'''
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00000186;class=Gene ark-1],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00000237;class=Gene bam-2],
−
| WBGene00000150||apm-1||GO:0040010 | GO:0002119 | GO:0040007 | GO:0030131 | GO:0006886 | GO:0016192 | GO:0040011 | GO:0005515
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00000238;class=Gene bar-1],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00000393;class=Gene cdf-1],
−
| WBGene00000168||apx-1||GO:0016331 | GO:0040028 | GO:0016020 | GO:0046331 | GO:0009792 | GO:0016021 | GO:0007154 | GO:0009880
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00000424;class=Gene ced-10],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00000443;class=Gene ceh-20],
−
| WBGene00000186||ark-1||GO:0004672 | GO:0004674 | GO:0004713 | GO:0006468 | GO:0009792 | GO:0005524 | GO:0042059 | GO:0040027
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00000516;class=Gene cki-1],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00000584;class=Gene cog-1],
−
| WBGene00000237||bam-2||GO:0016021 | GO:0005887
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00000871;class=Gene cye-1],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00000998;class=Gene dig-1],
−
| WBGene00000238||bar-1||GO:0005737 | GO:0040010 | GO:0016055 | GO:0002009 | GO:0007617 | GO:0040028 | GO:0005913 | GO:0005625 | GO:0040026 | GO:0045944 | GO:0008134 | GO:0043058 | GO:0005624 | GO:0003713 | GO:0005488 | GO:0030334 | GO:0042659 | GO:0040035 | GO:0040011 | GO:0007265 | GO:0005515 | GO:0005634 | GO:0018991
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00001081;class=Gene dpy-22],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00001082;class=Gene dpy-23],
−
| WBGene00000393||cdf-1||GO:0040010 | GO:0005886 | GO:0006810 | GO:0005385 | GO:0016020 | GO:0040026 | GO:0046579 | GO:0008324 | GO:0005488 | GO:0006829 | GO:0005215 | GO:0016021 | GO:0006812
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00001103;class=Gene dsl-1],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00001159;class=Gene eff-1],
−
| WBGene00000424||ced-10||GO:0003924 | GO:0033563 | GO:0005886 | GO:0006913 | GO:0010171 | GO:0002119 | GO:0002009 | GO:0040007 | GO:0007165 | GO:0043652 | GO:0005625 | GO:0001764 | GO:0016477 | GO:0006886 | GO:0005626 | GO:0015031 | GO:0005622 | GO:0048812 | GO:0007264 | GO:0048846 | GO:0008045 | GO:0009898 | GO:0040035 | GO:0031410 | GO:0005515 | GO:0005525
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00001161;class=Gene efl-1],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00001182;class=Gene egl-13],
−
| WBGene00000443||ceh-20||GO:0040010 | GO:0003677 | GO:0010171 | GO:0008340 | GO:0016477 | GO:0003700 | GO:0009952 | GO:0006355 | GO:0009792 | GO:0007498 | GO:0045449 | GO:0043565 | GO:0040011 | GO:0005515 | GO:0040027 | GO:0005634 | GO:0018991
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00001185;class=Gene egl-17],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00001186;class=Gene egl-18],
−
| WBGene00000516||cki-1||GO:0040010 | GO:0010171 | GO:0002119 | GO:0040007 | GO:0007050 | GO:0009792 | GO:0008406 | GO:0051729 | GO:0040035 | GO:0040011 | GO:0040015 | GO:0005634 | GO:0018991 | GO:0004861
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00001187;class=Gene egl-19],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00001193;class=Gene egl-26],
−
| WBGene00000584||cog-1||GO:0003677 | GO:0000003 | GO:0003700 | GO:0006355 | GO:0045449 | GO:0043565 | GO:0040035 | GO:0005634
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00001196;class=Gene egl-30],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00001204;class=Gene egl-38],
−
| WBGene00000871||cye-1||GO:0042023 | GO:0040010 | GO:0045737 | GO:0010171 | GO:0002119 | GO:0000003 | GO:0009791 | GO:0000307 | GO:0040007 | GO:0008284 | GO:0040026 | GO:0009792 | GO:0016538 | GO:0051301 | GO:0000910 | GO:0040035 | GO:0007281 | GO:0000082 | GO:0005634
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00001253;class=Gene elt-6],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00001358;class=Gene evl-20],
−
| WBGene00000998||dig-1||GO:0006796 | GO:0008406 | GO:0005507 | GO:0004427 | GO:0040035 | GO:0005737 | GO:0000287 | GO:0005509 | GO:0007399 | GO:0009055
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00001515;class=Gene gap-1],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00001667;class=Gene gpa-5],
−
| WBGene00001081||dpy-22||GO:0040010 | GO:0010171 | GO:0002119 | GO:0009792 | GO:0040018 | GO:0018991 | GO:0040035 | GO:0040011
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00001834;class=Gene hda-1],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00002020;class=Gene hsp-16.49],
−
| WBGene00001082||dpy-23||GO:0040010 | GO:0010171 | GO:0005515 | GO:0002119 | GO:0040007 | GO:0030117 | GO:0016192 | GO:0030131 | GO:0006886 | GO:0040011 | GO:0018996
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00002239;class=Gene ksr-1],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00002246;class=Gene lag-2],
−
| WBGene00001103||dsl-1||GO:0007154 | GO:0016020
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00002299;class=Gene let-23],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00002335;class=Gene let-60],
−
| WBGene00001159||eff-1||GO:0045026 | GO:0010171 | GO:0043282 | GO:0040032 | GO:0004623 | GO:0007275 | GO:0016021 | GO:0045138 | GO:0005576 | GO:0009792 | GO:0000768 | GO:0005887 | GO:0018991 | GO:0040025 | GO:0002009 | GO:0006644 | GO:0042802 | GO:0040035 | GO:0040011 | GO:0035121 | GO:0016042 | GO:0010172
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00002990;class=Gene lin-1],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00002992;class=Gene lin-3],
−
| WBGene00001161||efl-1||GO:0005667 | GO:0016564 | GO:0003700 | GO:0006355 | GO:0040027 | GO:0048557 | GO:0045749 | GO:0005634 | GO:0046580 | GO:0016481
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00002993;class=Gene lin-4],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003000;class=Gene lin-11],
−
| WBGene00001182||egl-13||GO:0003677 | GO:0045026 | GO:0009653 | GO:0000003 | GO:0003700 | GO:0006355 | GO:0018991 | GO:0040025 | GO:0040035 | GO:0005634
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003001;class=Gene lin-12],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003003;class=Gene lin-14],
−
| WBGene00001185||egl-17||GO:0008083
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003006;class=Gene lin-17],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003007;class=Gene lin-18],
−
| WBGene00001186||egl-18||GO:0040010 | GO:0010171 | GO:0043565 | GO:0006944 | GO:0002119 | GO:0040007 | GO:0003700 | GO:0006355 | GO:0009792 | GO:0001708 | GO:0002009 | GO:0040035 | GO:0040011 | GO:0005634 | GO:0040017 | GO:0008270 | GO:0040015
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003011;class=Gene lin-25],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003014;class=Gene lin-28],
−
| WBGene00001187||egl-19||GO:0005216 | GO:0010171 | GO:0016021 | GO:0000003 | GO:0018991 | GO:0016020 | GO:0005891 | GO:0040035 | GO:0006816 | GO:0005245 | GO:0043051 | GO:0040017 | GO:0006811 | GO:0040015
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003015;class=Gene lin-29],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003017;class=Gene lin-31],
−
| WBGene00001193||egl-26||GO:0002119 | GO:0040007 | GO:0009792 | GO:0000902 | GO:0018991 | GO:0040025 | GO:0016324
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003020;class=Gene lin-35],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003024;class=Gene lin-39],
−
| WBGene00001196||egl-30||GO:0007165 | GO:0031234 | GO:0005737 | GO:0003924 | GO:0002119 | GO:0005834 | GO:0007631 | GO:0007210 | GO:0043025 | GO:0030424 | GO:0005525 | GO:0018991 | GO:0043005 | GO:0007212 | GO:0006471 | GO:0019001 | GO:0004871 | GO:0040011 | GO:0046662 | GO:0007186 | GO:0043051 | GO:0040017
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003029;class=Gene lin-44],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003043;class=Gene lip-1],
−
| WBGene00001204||egl-38||GO:0003677 | GO:0002119 | GO:0003700 | GO:0045165 | GO:0040025 | GO:0030421 | GO:0005634 | GO:0040017 | GO:0045449
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003083;class=Gene lst-1],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003084;class=Gene lst-2],
−
| WBGene00001253||elt-6||GO:0043565 | GO:0003700 | GO:0006355 | GO:0005634 | GO:0008270
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003085;class=Gene lst-3],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003086;class=Gene lst-4],
−
| WBGene00001358||evl-20||GO:0040010 | GO:0010171 | GO:0005737 | GO:0000003 | GO:0009792 | GO:0005525 | GO:0002009 | GO:0006886 | GO:0007264 | GO:0000910 | GO:0040035 | GO:0040011 | GO:0005886 | GO:0015031 | GO:0005622 | GO:0005818
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003102;class=Gene mab-5],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003164;class=Gene mdt-6],
−
| WBGene00001515||gap-1||GO:0005096 | GO:0005622 | GO:0051056
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003239;class=Gene mig-2],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00003916;class=Gene par-1],
−
| WBGene00001667||gpa-5||GO:0040010 | GO:0007165 | GO:0045202 | GO:0043025 | GO:0030424 | GO:0019001 | GO:0004871 | GO:0007186
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00004077;class=Gene pop-1],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00004400;class=Gene rom-1],
−
| WBGene00001834||hda-1||GO:0040010 | GO:0045595 | GO:0000122 | GO:0008406 | GO:0005737 | GO:0016581 | GO:0001674 | GO:0000003 | GO:0009792 | GO:0000118 | GO:0040027 | GO:0048557 | GO:0004407 | GO:0040035 | GO:0016575 | GO:0005634 | GO:0046580 | GO:0003714 | GO:0045746
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00004773;class=Gene sem-4],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00004829;class=Gene sli-1],
−
| WBGene00002020||hsp-16.49||GO:0008340 | GO:0030968
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00005019;class=Gene sqv-1],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00005020;class=Gene sqv-2],
−
| WBGene00002239||ksr-1||GO:0040010 | GO:0004674 | GO:0006468 | GO:0004672 | GO:0007242 | GO:0004713 | GO:0005524
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00005021;class=Gene sqv-3],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00005022;class=Gene sqv-4],
−
| WBGene00002246||lag-2||GO:0040010 | GO:0043055 | GO:0008406 | GO:0016021 | GO:0007154 | GO:0042078 | GO:0002119 | GO:0031253 | GO:0005887 | GO:0001708 | GO:0016020 | GO:0032809 | GO:0040028
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00005023;class=Gene sqv-5],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00005024;class=Gene sqv-6],
−
| WBGene00002299||let-23||GO:0040026 | GO:0016021 | GO:0002119 | GO:0001542 | GO:0016323 | GO:0040027 | GO:0004674 | GO:0016020 | GO:0030539 | GO:0006468 | GO:0004672 | GO:0004713 | GO:0005524 | GO:0005006
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00005025;class=Gene sqv-7],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00005026;class=Gene sqv-8],
−
| WBGene00002335||let-60||GO:0040010 | GO:0010171 | GO:0007165 | GO:0005515 | GO:0003924 | GO:0002119 | GO:0000003 | GO:0040007 | GO:0009792 | GO:0031344 | GO:0040027 | GO:0005525 | GO:0040025 | GO:0048477 | GO:0006886 | GO:0007264 | GO:0042659 | GO:0040035 | GO:0040011 | GO:0006913 | GO:0007517 | GO:0015031 | GO:0005622 | GO:0005938
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00005039;class=Gene sra-13],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00006349;class=Gene sur-2],
−
| WBGene00002990||lin-1||GO:0043565 | GO:0003700 | GO:0006355 | GO:0009792 | GO:0040027 | GO:0040025 | GO:0042659 | GO:0040035 | GO:0005634
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00006365;class=Gene syg-1],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00006796;class=Gene unc-62],
−
| WBGene00002992||lin-3||GO:0040010 | GO:0040026 | GO:0016021 | GO:0002119 | GO:0000003 | GO:0007173 | GO:0005887 | GO:0001542 | GO:0018991 | GO:0030539 | GO:0005615 | GO:0042659 | GO:0009791 | GO:0005155 | GO:0031129 | GO:0040015
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00006829;class=Gene unc-101],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00006987;class=Gene zmp-1],
−
| WBGene00002993||lin-4||GO:0040034 | GO:0010171 | GO:0008283 | GO:0040026 | GO:0003730 | GO:0002119 | GO:0007618 | GO:0018991 | GO:0048666 | GO:0035195 | GO:0009791 | GO:0030182
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00007750;class=Gene syg-2],
−
|-
+
[http://www.wormbase.org/db/gene/gene?name=WBGene00023498;class=Gene lin-15A]<br>
−
| WBGene00003000||lin-11||GO:0040010 | GO:0003677 | GO:0040026 | GO:0045595 | GO:0007413 | GO:0043565 | GO:0003700 | GO:0006355 | GO:0001708 | GO:0018991 | GO:0040011 | GO:0005634 | GO:0008270 | GO:0045449 | GO:0030334
+
 
−
|-
+
==Cells==
−
| WBGene00003001||lin-12||GO:0040010 | GO:0004888 | GO:0040026 | GO:0030154 | GO:0016021 | GO:0005515 | GO:0002119 | GO:0001708 | GO:0040027 | GO:0018991 | GO:0040025 | GO:0016020 | GO:0040035 | GO:0040011 | GO:0045168 | GO:0005886 | GO:0005509 | GO:0016324 | GO:0043054 | GO:0007219
+
''(from WBook chapter "Vulval development")''<br>
−
|-
+
[http://www.wormbase.org/db/cell/cell.cgi?name=P4.pa;class=Cell;open=citation#citation P4.pa], 
−
| WBGene00003003||lin-14||GO:0040034 | GO:0000003 | GO:0040018 | GO:0018991 | GO:0048666 | GO:0040035 | GO:0040011 | GO:0005634
+
[http://www.wormbase.org/db/cell/cell.cgi?name=P8.p;class=Cell;open=citation#citation P8.p], 
−
|-
+
[http://www.wormbase.org/db/cell/cell.cgi?name=P11;class=Cell;open=citation#citation P11], 
−
| WBGene00003006||lin-17||GO:0045167 | GO:0004926 | GO:0008406 | GO:0009949 | GO:0016021 | GO:0045138 | GO:0009786 | GO:0007166 | GO:0010085 | GO:0040027 | GO:0002009 | GO:0016020 | GO:0048560 | GO:0042659 | GO:0040035 | GO:0005886 | GO:0040028 | GO:0030334 | GO:0004930
+
[http://www.wormbase.org/db/cell/cell.cgi?name=P6.p;class=Cell;open=citation#citation P6.p], 
−
|-
+
[http://www.wormbase.org/db/cell/cell.cgi?name=P2.p;class=Cell;open=citation#citation P2.p], 
−
| WBGene00003007||lin-18||GO:0045167 | GO:0009949 | GO:0016021 | GO:0009786 | GO:0010085 | GO:0040027 | GO:0004674 | GO:0002009 | GO:0006468 | GO:0048560 | GO:0040035 | GO:0004672 | GO:0040028 | GO:0004713 | GO:0005524
+
[http://www.wormbase.org/db/cell/cell.cgi?name=P8.pp;class=Cell;open=citation#citation P8.pp], 
−
|-
+
[http://www.wormbase.org/db/cell/cell.cgi?name=P3.pa;class=Cell;open=citation#citation P3.pa], 
−
| WBGene00003011||lin-25||GO:0040010 | GO:0040026 | GO:0005515 | GO:0002119 | GO:0001708 | GO:0040025 | GO:0000910 | GO:0040035 | GO:0005634
+
[http://www.wormbase.org/db/cell/cell.cgi?name=P1;class=Cell;open=citation#citation P1], 
−
|-
+
[http://www.wormbase.org/db/cell/cell.cgi?name=G1;class=Cell;open=citation#citation G1], 
−
| WBGene00003014||lin-28||GO:0003677 | GO:0040034 | GO:0005625 | GO:0006355 | GO:0018991 | GO:0003676 | GO:0008270
+
[http://www.wormbase.org/db/cell/cell.cgi?name=P1.p;class=Cell;open=citation#citation P1.p], 
−
|-
+
[http://www.wormbase.org/db/cell/cell.cgi?name=P5.p;class=Cell;open=citation#citation P5.p], 
−
| WBGene00003015||lin-29||GO:0040010 | GO:0040034 | GO:0002119 | GO:0000003 | GO:0018991 | GO:0002009 | GO:0003676 | GO:0043070 | GO:0040035 | GO:0040011 | GO:0005634 | GO:0008270 | GO:0005622
+
[http://www.wormbase.org/db/cell/cell.cgi?name=P4.p;class=Cell;open=citation#citation P4.p], 
−
|-
+
[http://www.wormbase.org/db/cell/cell.cgi?name=P9.p;class=Cell;open=citation#citation P9.p], 
−
| WBGene00003017||lin-31||GO:0043565 | GO:0003700 | GO:0006355 | GO:0040018 | GO:0040027 | GO:0040025 | GO:0040035 | GO:0005634
+
[http://www.wormbase.org/db/cell/cell.cgi?name=P4.pp;class=Cell;open=citation#citation P4.pp], 
−
|-
+
[http://www.wormbase.org/db/cell/cell.cgi?name=P3.pp;class=Cell;open=citation#citation P3.pp], 
−
| WBGene00003020||lin-35||GO:0040010 | GO:0010171 | GO:0002119 | GO:0000003 | GO:0040007 | GO:0009792 | GO:0040018 | GO:0040027 | GO:0018991 | GO:0048557 | GO:0002009 | GO:0005634 | GO:0016479
+
[http://www.wormbase.org/db/cell/cell.cgi?name=P8.pa;class=Cell;open=citation#citation P8.pa], 
−
|-
+
[http://www.wormbase.org/db/cell/cell.cgi?name=P2;class=Cell;open=citation#citation P2], 
−
| WBGene00003024||lin-39||GO:0040010 | GO:0003677 | GO:0045026 | GO:0040026 | GO:0043565 | GO:0007265 | GO:0003700 | GO:0006355 | GO:0040027 | GO:0018991 | GO:0040025 | GO:0051302 | GO:0016477 | GO:0009952 | GO:0042659 | GO:0040011 | GO:0005634 | GO:0045449
+
[http://www.wormbase.org/db/cell/cell.cgi?name=P7.p;class=Cell;open=citation#citation P7.p], 
−
|-
+
[http://www.wormbase.org/db/cell/cell.cgi?name=P11.p;class=Cell;open=citation#citation P11.p], 
−
| WBGene00003029||lin-44||GO:0040010 | GO:0007275 | GO:0005576 | GO:0004871 | GO:0007223
+
[http://www.wormbase.org/db/cell/cell.cgi?name=P3;class=Cell;open=citation#citation P3], 
−
|-
+
[http://www.wormbase.org/db/cell/cell.cgi?name=P3.p;class=Cell;open=citation#citation P3.p]<br>
−
| WBGene00003043||lip-1||GO:0006470 | GO:0051447 | GO:0048599 | GO:0009792 | GO:0017017 | GO:0042659 | GO:0016311 | GO:0005886 | GO:0043407 | GO:0046580 | GO:0040028 | GO:0007219 | GO:0016791 | GO:0008138
+
 
−
|-
+
==Associated GO assignments==
−
| WBGene00003083||lst-1||GO:0009792
+
 
−
|-
+
 
−
| WBGene00003084||lst-2||GO:0032266
+
[[Category:User Guide]]
−
|-
 
−
| WBGene00003085||lst-3||GO:0040010 | GO:0003676 | GO:0040011 | GO:0005509 | GO:0040017
 
−
|-
 
−
| WBGene00003086||lst-4||GO:0007154 | GO:0005515 | GO:0009792 | GO:0035091
 
−
|-
 
−
| WBGene00003102||mab-5||GO:0003677 | GO:0000122 | GO:0045138 | GO:0043565 | GO:0003700 | GO:0006355 | GO:0050679 | GO:0009952 | GO:0042659 | GO:0051179 | GO:0005634 | GO:0045449 | GO:0030334
 
−
|-
 
−
| WBGene00003164||mdt-6||GO:0008406 | GO:0009792 | GO:0030528 | GO:0005634 | GO:0045449
 
−
|-
 
−
| WBGene00003239||mig-2||GO:0048846 | GO:0033563 | GO:0001764 | GO:0048812 | GO:0005525 | GO:0016477 | GO:0008078 | GO:0007264 | GO:0015031 | GO:0005622 | GO:0008045
 
−
|-
 
−
| WBGene00003916||par-1||GO:0045167 | GO:0009949 | GO:0000003 | GO:0009792 | GO:0040025 | GO:0004674 | GO:0016020 | GO:0006468 | GO:0040035 | GO:0009880 | GO:0004672 | GO:0004713 | GO:0030010 | GO:0005524 | GO:0005938
 
−
|-
 
−
| WBGene00004077||pop-1||GO:0040010 | GO:0003677 | GO:0003702 | GO:0040026 | GO:0045944 | GO:0043282 | GO:0007500 | GO:0000003 | GO:0009786 | GO:0006355 | GO:0009792 | GO:0010085 | GO:0040027 | GO:0007052 | GO:0001703 | GO:0002009 | GO:0009795 | GO:0042659 | GO:0040035 | GO:0006357 | GO:0009880 | GO:0005634 | GO:0008013
 
−
|-
 
−
| WBGene00004400||rom-1||GO:0007165 | GO:0016021 | GO:0004252
 
−
|-
 
−
| WBGene00004773||sem-4||GO:0040010 | GO:0018991 | GO:0003676 | GO:0008270 | GO:0005622
 
−
|-
 
−
| WBGene00004829||sli-1||GO:0040010 | GO:0005515 | GO:0007166 | GO:0004871 | GO:0005634 | GO:0005509 | GO:0008270
 
−
|-
 
−
| WBGene00005019||sqv-1||GO:0044237 | GO:0050662 | GO:0016021 | GO:0005737 | GO:0008152 | GO:0000003 | GO:0009792 | GO:0003824 | GO:0018991 | GO:0040025 | GO:0002009 | GO:0005488
 
−
|-
 
−
| WBGene00005020||sqv-2||GO:0051301 | GO:0016021 | GO:0000003 | GO:0009792 | GO:0040018 | GO:0018991 | GO:0040025 | GO:0002009 | GO:0016020 | GO:0008378 | GO:0000910 | GO:0040011 | GO:0006486 | GO:0005794
 
−
|-
 
−
| WBGene00005021||sqv-3||GO:0016021 | GO:0022604 | GO:0000003 | GO:0016757 | GO:0009792 | GO:0018991 | GO:0040025 | GO:0005975 | GO:0002009
 
−
|-
 
−
| WBGene00005022||sqv-4||GO:0050662 | GO:0016616 | GO:0008152 | GO:0000003 | GO:0009792 | GO:0003824 | GO:0018991 | GO:0051287 | GO:0040025 | GO:0002009 | GO:0005488 | GO:0016491
 
−
|-
 
−
| WBGene00005023||sqv-5||GO:0016021 | GO:0005737 | GO:0000003 | GO:0009792 | GO:0018991 | GO:0040025 | GO:0002009 | GO:0048477
 
−
|-
 
−
| WBGene00005024||sqv-6||GO:0051301 | GO:0008375 | GO:0016021 | GO:0000003 | GO:0008340 | GO:0040018 | GO:0018991 | GO:0040025 | GO:0002009 | GO:0016020 | GO:0000910 | GO:0040011
 
−
|-
 
−
| WBGene00005025||sqv-7||GO:0016021 | GO:0005737 | GO:0000003 | GO:0009792 | GO:0018991 | GO:0040025 | GO:0002009
 
−
|-
 
−
| WBGene00005026||sqv-8||GO:0016021 | GO:0000003 | GO:0009792 | GO:0018991 | GO:0040025 | GO:0002009 | GO:0016020 | GO:0015018
 
−
|-
 
−
| WBGene00005039||sra-13||GO:0004888 | GO:0016021 | GO:0007606
 
−
|-
 
−
| WBGene00006349||sur-2||GO:0040010 | GO:0008340 | GO:0009792 | GO:0018991 | GO:0040011 | GO:0042176
 
−
|-
 
−
| WBGene00006365||syg-1||GO:0004888 | GO:0019865 | GO:0016021 | GO:0008039 | GO:0007267 | GO:0050808 | GO:0045202 | GO:0005887 | GO:0030424 | GO:0048755
 
−
|-
 
−
| WBGene00006796||unc-62||GO:0040010 | GO:0003677 | GO:0010171 | GO:0043565 | GO:0003700 | GO:0006355 | GO:0009792 | GO:0018991 | GO:0048477 | GO:0016477 | GO:0040035 | GO:0040011 | GO:0005634 | GO:0045449
 
−
|-
 
−
| WBGene00006829||unc-101||GO:0005515 | GO:0002119 | GO:0009792 | GO:0030117 | GO:0016192 | GO:0030131 | GO:0006886 | GO:0040011
 
−
|-
 
−
| WBGene00006987||zmp-1||GO:0008152 | GO:0009986 | GO:0003824 | GO:0005578 | GO:0046872 | GO:0004222 | GO:0008237 | GO:0006508
 
−
|-
 
−
| WBGene00007750||syg-2||GO:0004888 | GO:0019865 | GO:0016021 | GO:0008039 | GO:0007267 | GO:0050808 | GO:0005887
 
−
|-
 
−
| WBGene00023498||lin-15A||GO:0002119 | GO:0040007 | GO:0040027 | GO:0042659
 
−
|}
 

Latest revision as of 18:43, 17 August 2010

[Processes index]

Vulval development in C. elegans

Signaling pathways

(draw out in wikipathways, connect to reactome)
WNT [EGF] [Notch]

Process steps

Morphogenesis of ventral epithelia

Generation of VPC's
Vulval Precursor Patterning
Generation of the adult
Anchor cell invasion
Morphogenesis of the vulva
Generation of the anchor cell: AC/UV decision

Morphogenesis of uterine epithelia

Uterine patterning: pi cell induction
Uterine patterning: uv1 induction
Patterning of adult cell types: 1° lineage
Patterning of adult cell types: Polarity of 2° lineage

Genes

(from WBook chapter "Vulval development")
apm-1, apx-1, ark-1, bam-2, bar-1, cdf-1, ced-10, ceh-20, cki-1, cog-1, cye-1, dig-1, dpy-22, dpy-23, dsl-1, eff-1, efl-1, egl-13, egl-17, egl-18, egl-19, egl-26, egl-30, egl-38, elt-6, evl-20, gap-1, gpa-5, hda-1, hsp-16.49, ksr-1, lag-2, let-23, let-60, lin-1, lin-3, lin-4, lin-11, lin-12, lin-14, lin-17, lin-18, lin-25, lin-28, lin-29, lin-31, lin-35, lin-39, lin-44, lip-1, lst-1, lst-2, lst-3, lst-4, mab-5, mdt-6, mig-2, par-1, pop-1, rom-1, sem-4, sli-1, sqv-1, sqv-2, sqv-3, sqv-4, sqv-5, sqv-6, sqv-7, sqv-8, sra-13, sur-2, syg-1, unc-62, unc-101, zmp-1, syg-2, lin-15A

Cells

(from WBook chapter "Vulval development")
P4.pa, P8.p, P11, P6.p, P2.p, P8.pp, P3.pa, P1, G1, P1.p, P5.p, P4.p, P9.p, P4.pp, P3.pp, P8.pa, P2, P7.p, P11.p, P3, P3.p

Associated GO assignments

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