Difference between revisions of "Unused Attributes"
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Line 27: | Line 27: | ||
| ?2_point_data | | ?2_point_data | ||
| Recs_all (4) | | Recs_all (4) | ||
+ | | Removing because docs make this look inadvertant (thomasd) | ||
|- | |- | ||
| :ace2so/description | | :ace2so/description | ||
Line 35: | Line 36: | ||
| #Address | | #Address | ||
| Other_phone (2) | | Other_phone (2) | ||
+ | | Removing for the sake of symmetry (thomasd) | ||
|- | |- | ||
| :affiliation/affiliation-address | | :affiliation/affiliation-address | ||
Line 47: | Line 49: | ||
| ?Anatomy_term | | ?Anatomy_term | ||
| Evidence | | Evidence | ||
+ | | Remove (raymond) | ||
|- | |- | ||
| :anatomy-term/reference | | :anatomy-term/reference | ||
| ?Anatomy_term | | ?Anatomy_term | ||
| Reference | | Reference | ||
+ | | Remove (raymond) | ||
|- | |- | ||
| :anatomy-term/url | | :anatomy-term/url | ||
| ?Anatomy_term | | ?Anatomy_term | ||
| URL | | URL | ||
+ | | Remove (raymond) | ||
|- | |- | ||
| :anatomy-term/version | | :anatomy-term/version | ||
| ?Anatomy_term | | ?Anatomy_term | ||
| Version | | Version | ||
+ | | Remove (raymond) | ||
|- | |- | ||
| :anatomy-term.version/int-a | | :anatomy-term.version/int-a | ||
| ?Anatomy_term | | ?Anatomy_term | ||
| Version (1) | | Version (1) | ||
+ | | Remove (raymond) | ||
|- | |- | ||
| :anatomy-term.version/int-b | | :anatomy-term.version/int-b | ||
| ?Anatomy_term | | ?Anatomy_term | ||
| Version (2) | | Version (2) | ||
+ | | Remove (raymond) | ||
|- | |- | ||
| :antibody/person | | :antibody/person | ||
Line 75: | Line 83: | ||
| ?AO_code | | ?AO_code | ||
| Description | | Description | ||
+ | | Remove (raymond) | ||
|- | |- | ||
| :ao-code/remark | | :ao-code/remark | ||
| ?AO_code | | ?AO_code | ||
| Remark | | Remark | ||
+ | | Remove (raymond) | ||
|- | |- | ||
| :ao-code.remark/text | | :ao-code.remark/text | ||
| ?AO_code | | ?AO_code | ||
| Remark (1) | | Remark (1) | ||
+ | | Remove (raymond) | ||
|- | |- | ||
| :balancer/locus | | :balancer/locus | ||
Line 111: | Line 122: | ||
| ?Cell | | ?Cell | ||
| GO_term | | GO_term | ||
+ | | Remove ?Cell entirely (raymond) | ||
|- | |- | ||
| :cell.go-term/go-code | | :cell.go-term/go-code | ||
| ?Cell | | ?Cell | ||
| GO_term (2) | | GO_term (2) | ||
+ | | Remove ?Cell entirely (raymond) | ||
|- | |- | ||
| :cell.go-term/go-term | | :cell.go-term/go-term | ||
| ?Cell | | ?Cell | ||
| GO_term (1) | | GO_term (1) | ||
+ | | Remove ?Cell entirely (raymond) | ||
|- | |- | ||
| :clone/does-not-hybridize-to | | :clone/does-not-hybridize-to | ||
Line 235: | Line 249: | ||
| ?DO_term | | ?DO_term | ||
| Broad | | Broad | ||
+ | | Remove (Ranjana) | ||
|- | |- | ||
| :do-term/reference | | :do-term/reference | ||
| ?DO_term | | ?DO_term | ||
| Reference | | Reference | ||
+ | | Remove (Ranjana) | ||
|- | |- | ||
| :do-term/version | | :do-term/version | ||
| ?DO_term | | ?DO_term | ||
| Version | | Version | ||
+ | | Please keep, DO will introduce versioning (Ranjana) | ||
|- | |- | ||
| :do-term/worm-disease-model | | :do-term/worm-disease-model | ||
| ?DO_term | | ?DO_term | ||
| Worm_disease_model | | Worm_disease_model | ||
+ | | Remove (Ranjana) | ||
|- | |- | ||
| :do-term.worm-disease-model/species | | :do-term.worm-disease-model/species | ||
| ?DO_term | | ?DO_term | ||
| Worm_disease_model (2) | | Worm_disease_model (2) | ||
+ | | Remove (Ranjana) | ||
|- | |- | ||
| :do-term.worm-disease-model/text | | :do-term.worm-disease-model/text | ||
| ?DO_term | | ?DO_term | ||
| Worm_disease_model (1) | | Worm_disease_model (1) | ||
+ | | Remove (Ranjana) | ||
|- | |- | ||
| :embl-dump-info/embl-reference | | :embl-dump-info/embl-reference | ||
Line 275: | Line 295: | ||
| ?Expr_pattern | | ?Expr_pattern | ||
| CDS | | CDS | ||
+ | | Remove (Daniela) | ||
|- | |- | ||
| :expr-pattern/cell | | :expr-pattern/cell | ||
| ?Expr_pattern | | ?Expr_pattern | ||
| Cell | | Cell | ||
+ | | Remove (Daniela) | ||
|- | |- | ||
| :expr-pattern/cell-group | | :expr-pattern/cell-group | ||
| ?Expr_pattern | | ?Expr_pattern | ||
| Cell_group | | Cell_group | ||
+ | | Remove (Daniela) | ||
|- | |- | ||
| :expr-pattern/construct | | :expr-pattern/construct | ||
| ?Expr_pattern | | ?Expr_pattern | ||
| Construct | | Construct | ||
+ | | Populated in WS245 | ||
|- | |- | ||
| :expr-pattern/pseudogene | | :expr-pattern/pseudogene | ||
| ?Expr_pattern | | ?Expr_pattern | ||
| Pseudogene | | Pseudogene | ||
+ | | Remove (Daniela) | ||
|- | |- | ||
| :expr-pattern.cell/cell | | :expr-pattern.cell/cell | ||
| ?Expr_pattern | | ?Expr_pattern | ||
| Cell (1) | | Cell (1) | ||
+ | | Remove (Daniela) | ||
|- | |- | ||
| :expr-pattern.cell-group/cell-group | | :expr-pattern.cell-group/cell-group | ||
| ?Expr_pattern | | ?Expr_pattern | ||
| Cell_group (1) | | Cell_group (1) | ||
+ | | Remove (Daniela) | ||
|- | |- | ||
| :expr-profile/species | | :expr-profile/species | ||
Line 388: | Line 415: | ||
| ?Gene_cluster | | ?Gene_cluster | ||
| Database | | Database | ||
+ | | Remove? need to check with Michael P. and Kevin --[[User:Kyook|Kyook]] ([[User talk:Kyook|talk]]) 23:29, 12 November 2014 (UTC). (mp says this can be removed -- thomasd 2015-02-02) | ||
|- | |- | ||
| :gene-cluster/title | | :gene-cluster/title | ||
| ?Gene_cluster | | ?Gene_cluster | ||
| Title | | Title | ||
+ | | Remove (--[[User:Kyook|Kyook]] ([[User talk:Kyook|talk]]) 23:29, 12 November 2014 (UTC)) | ||
|- | |- | ||
| :gene-cluster.database/accession | | :gene-cluster.database/accession | ||
Line 518: | Line 547: | ||
| ?Homology_group | | ?Homology_group | ||
| InParanoid_group | | InParanoid_group | ||
+ | | you can axe that one, as we treat it now the same as regular orthologies - [[User:Mh6|Mh6]] ([[User talk:Mh6|talk]]) | ||
|- | |- | ||
| :homology-type/nemnog | | :homology-type/nemnog | ||
| #Homology_type | | #Homology_type | ||
| nemNOG | | nemNOG | ||
+ | | wasn't used in the last import, might change again in the future - [[User:Mh6|Mh6]] ([[User talk:Mh6|talk]]) | ||
|- | |- | ||
| :homology-type/nog | | :homology-type/nog | ||
| #Homology_type | | #Homology_type | ||
| NOG | | NOG | ||
+ | | wasn't used in the last import, might change again in the future - [[User:Mh6|Mh6]] ([[User talk:Mh6|talk]]) | ||
|- | |- | ||
| :interaction/affinity-capture-ms | | :interaction/affinity-capture-ms | ||
| ?Interaction | | ?Interaction | ||
| Affinity_capture_MS | | Affinity_capture_MS | ||
+ | | Data is in Caltech's curation database. kmva 2014-11-05 | ||
|- | |- | ||
| :interaction/affinity-capture-rna | | :interaction/affinity-capture-rna | ||
| ?Interaction | | ?Interaction | ||
| Affinity_capture_RNA | | Affinity_capture_RNA | ||
+ | | No data yet, but will be used. kmva 2014-11-05 | ||
|- | |- | ||
| :interaction/biochemical-activity | | :interaction/biochemical-activity | ||
| ?Interaction | | ?Interaction | ||
| Biochemical_activity | | Biochemical_activity | ||
+ | | Data is in Caltech's curation database. kmva 2014-11-05 | ||
|- | |- | ||
| :interaction/chromatin-immunoprecipitation | | :interaction/chromatin-immunoprecipitation | ||
| ?Interaction | | ?Interaction | ||
| Chromatin_immunoprecipitation | | Chromatin_immunoprecipitation | ||
+ | | Data is in Caltech's curation database. kmva 2014-11-05 | ||
|- | |- | ||
| :interaction/cocrystal-structure | | :interaction/cocrystal-structure | ||
| ?Interaction | | ?Interaction | ||
| Cocrystal_structure | | Cocrystal_structure | ||
+ | | Data is in Caltech's curation database. kmva 2014-11-05 | ||
|- | |- | ||
| :interaction/cofractionation | | :interaction/cofractionation | ||
| ?Interaction | | ?Interaction | ||
| Cofractionation | | Cofractionation | ||
+ | | Data is in Caltech's curation database. kmva 2014-11-05 | ||
|- | |- | ||
| :interaction/construct | | :interaction/construct | ||
Line 558: | Line 596: | ||
| ?Interaction | | ?Interaction | ||
| Database | | Database | ||
+ | | Data is in Caltech's curation database. kmva 2014-11-05 | ||
|- | |- | ||
| :interaction/deviation-from-expectation | | :interaction/deviation-from-expectation | ||
Line 570: | Line 609: | ||
| ?Interaction | | ?Interaction | ||
| Far_western | | Far_western | ||
+ | | Data is in Caltech's curation database. kmva 2014-11-05 | ||
|- | |- | ||
| :interaction/fluorescence-resonance-energy-transfer | | :interaction/fluorescence-resonance-energy-transfer | ||
| ?Interaction | | ?Interaction | ||
| Fluorescence_resonance_energy_transfer | | Fluorescence_resonance_energy_transfer | ||
+ | | Data is in Caltech's curation database. kmva 2014-11-05 | ||
|- | |- | ||
| :interaction/from-company | | :interaction/from-company | ||
Line 594: | Line 635: | ||
| ?Interaction | | ?Interaction | ||
| Protein_fragment_complementation_assay | | Protein_fragment_complementation_assay | ||
+ | | Data is in Caltech's curation database. kmva 2014-11-05 | ||
|- | |- | ||
| :interaction/protein-peptide | | :interaction/protein-peptide | ||
| ?Interaction | | ?Interaction | ||
| Protein_peptide | | Protein_peptide | ||
+ | | Data is in Caltech's curation database. kmva 2014-11-05 | ||
|- | |- | ||
| :interaction/protein-rna | | :interaction/protein-rna | ||
| ?Interaction | | ?Interaction | ||
| Protein_RNA | | Protein_RNA | ||
+ | | Data is in Caltech's curation database. kmva 2014-11-05 | ||
|- | |- | ||
| :interaction/reconstituted-complex | | :interaction/reconstituted-complex | ||
| ?Interaction | | ?Interaction | ||
| Reconstituted_complex | | Reconstituted_complex | ||
+ | | Data is in Caltech's curation database. kmva 2014-11-05 | ||
|- | |- | ||
| :interaction/unaffiliated-construct | | :interaction/unaffiliated-construct | ||
Line 614: | Line 659: | ||
| ?Interaction | | ?Interaction | ||
| Database (3) | | Database (3) | ||
+ | | Data is in Caltech's curation database. kmva 2014-11-05 | ||
|- | |- | ||
| :interaction.database/database | | :interaction.database/database | ||
| ?Interaction | | ?Interaction | ||
| Database (1) | | Database (1) | ||
+ | | Data is in Caltech's curation database. kmva 2014-11-05 | ||
|- | |- | ||
| :interaction.database/field | | :interaction.database/field | ||
| ?Interaction | | ?Interaction | ||
| Database (2) | | Database (2) | ||
+ | | Data is in Caltech's curation database. kmva 2014-11-05 | ||
|- | |- | ||
| :interaction.interactor-overlapping-protein/protein | | :interaction.interactor-overlapping-protein/protein | ||
Line 1,014: | Line 1,062: | ||
| ?Molecule | | ?Molecule | ||
| Name | | Name | ||
+ | | Remove --[[User:Kyook|Kyook]] ([[User talk:Kyook|talk]]) 23:29, 12 November 2014 (UTC) | ||
|- | |- | ||
| :molecule/remark | | :molecule/remark | ||
| ?Molecule | | ?Molecule | ||
| Remark | | Remark | ||
+ | | please keep --[[User:Kyook|Kyook]] ([[User talk:Kyook|talk]]) 23:29, 12 November 2014 (UTC) | ||
+ | | | ||
|- | |- | ||
| :molecule.remark/text | | :molecule.remark/text | ||
| ?Molecule | | ?Molecule | ||
| Remark (1) | | Remark (1) | ||
+ | | please keep --[[User:Kyook|Kyook]] ([[User talk:Kyook|talk]]) 23:29, 12 November 2014 (UTC) | ||
|- | |- | ||
| :motif/db-remark | | :motif/db-remark | ||
Line 1,050: | Line 1,102: | ||
| ?Movie | | ?Movie | ||
| Description | | Description | ||
+ | | Keep (Daniela) | ||
|- | |- | ||
| :movie/variation | | :movie/variation | ||
| ?Movie | | ?Movie | ||
| Variation | | Variation | ||
+ | | Keep (Daniela) | ||
|- | |- | ||
| :oligo/gc | | :oligo/gc | ||
Line 1,102: | Line 1,156: | ||
| ?Paper | | ?Paper | ||
| Directory | | Directory | ||
+ | | Could remove this tag. kmva 2014-11-05 | ||
|- | |- | ||
| :paper/email | | :paper/email | ||
| ?Paper | | ?Paper | ||
| Email | | Email | ||
+ | | Could keep this? The intent was to use this if we wanted to actually include the text of an email as a paper reference. kmva 2014-11-05 | ||
|- | |- | ||
| :paper/original-timestamp | | :paper/original-timestamp | ||
| ?Paper | | ?Paper | ||
| Original_timestamp | | Original_timestamp | ||
+ | | Not 100% certain, but I think we could remove this one. kmva 2014-11-05 | ||
|- | |- | ||
| :paper/species | | :paper/species | ||
| ?Paper | | ?Paper | ||
| Species | | Species | ||
+ | | Would like to keep this. kmva 2014-11-05 | ||
|- | |- | ||
| :paper.species/species | | :paper.species/species | ||
| ?Paper | | ?Paper | ||
| Species (1) | | Species (1) | ||
+ | | Would like to keep this. kmva 2014-11-05 | ||
|- | |- | ||
| :pcr-product/species | | :pcr-product/species | ||
Line 1,146: | Line 1,205: | ||
| ?Phenotype | | ?Phenotype | ||
| DO_term | | DO_term | ||
+ | | ask Ranjana --[[User:Kyook|Kyook]] ([[User talk:Kyook|talk]]) 06:25, 13 November 2014 (UTC) | ||
|- | |- | ||
| :phenotype/short-name | | :phenotype/short-name | ||
| ?Phenotype | | ?Phenotype | ||
| Short_name | | Short_name | ||
+ | | ask Gary S. --[[User:Kyook|Kyook]] ([[User talk:Kyook|talk]]) 06:25, 13 November 2014 (UTC) | ||
|- | |- | ||
| :phenotype-info/mixed | | :phenotype-info/mixed | ||
| #Phenotype_info | | #Phenotype_info | ||
| Mixed | | Mixed | ||
+ | | Wow, I wasn't aware of this tag. Will have to look up its intended use. Might be handy, so please keep for now. --[[User:Kyook|Kyook]] ([[User talk:Kyook|talk]]) 06:25, 13 November 2014 (UTC) | ||
|- | |- | ||
| :phenotype-info/not | | :phenotype-info/not | ||
| #Phenotype_info | | #Phenotype_info | ||
| Not | | Not | ||
+ | | Remove --[[User:Kyook|Kyook]] ([[User talk:Kyook|talk]]) 06:25, 13 November 2014 (UTC) | ||
|- | |- | ||
| :phenotype.do-term/do-term | | :phenotype.do-term/do-term | ||
| ?Phenotype | | ?Phenotype | ||
| DO_term (1) | | DO_term (1) | ||
+ | | ask Ranjana --[[User:Kyook|Kyook]] ([[User talk:Kyook|talk]]) 06:25, 13 November 2014 (UTC) | ||
|- | |- | ||
| :phenotype.go-term/go-code | | :phenotype.go-term/go-code | ||
| ?Phenotype | | ?Phenotype | ||
| GO_term (2) | | GO_term (2) | ||
+ | | ask Kimberly --[[User:Kyook|Kyook]] ([[User talk:Kyook|talk]]) 06:25, 13 November 2014 (UTC) | ||
|- | |- | ||
| :phenotype.short-name/text | | :phenotype.short-name/text | ||
| ?Phenotype | | ?Phenotype | ||
| Short_name (1) | | Short_name (1) | ||
+ | | ask Gary S. --[[User:Kyook|Kyook]] ([[User talk:Kyook|talk]]) 06:25, 13 November 2014 (UTC) | ||
|- | |- | ||
| :picture/evidence | | :picture/evidence | ||
| ?Picture | | ?Picture | ||
| Evidence | | Evidence | ||
+ | | Remove (Daniela) | ||
|- | |- | ||
| :picture/species | | :picture/species | ||
| ?Picture | | ?Picture | ||
| Species | | Species | ||
+ | | Keep (Daniela) | ||
|- | |- | ||
| :pos-neg-data.gene-2/variation | | :pos-neg-data.gene-2/variation | ||
Line 1,854: | Line 1,922: | ||
| ?Variation | | ?Variation | ||
| HME0_Mating_not_successful | | HME0_Mating_not_successful | ||
+ | | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|- | |- | ||
| :variation/hme1-mating-rarely-successful | | :variation/hme1-mating-rarely-successful | ||
| ?Variation | | ?Variation | ||
| HME1_Mating_rarely_successful | | HME1_Mating_rarely_successful | ||
+ | | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|- | |- | ||
| :variation/hme2-mating-usually-successful | | :variation/hme2-mating-usually-successful | ||
| ?Variation | | ?Variation | ||
| HME2_Mating_usually_successful | | HME2_Mating_usually_successful | ||
+ | | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|- | |- | ||
| :variation/hme3-mating-always-successful | | :variation/hme3-mating-always-successful | ||
| ?Variation | | ?Variation | ||
| HME3_Mating_always_successful | | HME3_Mating_always_successful | ||
+ | | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|- | |- | ||
| :variation/inversion | | :variation/inversion | ||
Line 1,878: | Line 1,950: | ||
| ?Variation | | ?Variation | ||
| ME0_Mating_not_successful | | ME0_Mating_not_successful | ||
+ | | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|- | |- | ||
| :variation/me1-mating-rarely-successful | | :variation/me1-mating-rarely-successful | ||
| ?Variation | | ?Variation | ||
| ME1_Mating_rarely_successful | | ME1_Mating_rarely_successful | ||
+ | | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|- | |- | ||
| :variation/me2-mating-usually-successful | | :variation/me2-mating-usually-successful | ||
| ?Variation | | ?Variation | ||
| ME2_Mating_usually_successful | | ME2_Mating_usually_successful | ||
+ | | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|- | |- | ||
| :variation/me3-mating-always-successful | | :variation/me3-mating-always-successful | ||
| ?Variation | | ?Variation | ||
| ME3_Mating_always_successful | | ME3_Mating_always_successful | ||
+ | | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|- | |- | ||
| :variation/missense | | :variation/missense | ||
Line 1,910: | Line 1,986: | ||
| ?Variation | | ?Variation | ||
| Phenotype_remark | | Phenotype_remark | ||
+ | | Curated through phenotype_info, not sure this is needed here --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|- | |- | ||
| :variation/production-method | | :variation/production-method | ||
Line 1,958: | Line 2,035: | ||
| ?Variation | | ?Variation | ||
| Phenotype_remark (1) | | Phenotype_remark (1) | ||
+ | | Curated through phenotype_info, not sure this is needed here --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|- | |- | ||
| :variation.readthrough/text | | :variation.readthrough/text | ||
Line 1,970: | Line 2,048: | ||
| ?WBProcess | | ?WBProcess | ||
| DO_term | | DO_term | ||
+ | | please leave for now --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|- | |- | ||
| :wbprocess/historical-gene | | :wbprocess/historical-gene | ||
| ?WBProcess | | ?WBProcess | ||
| Historical_gene | | Historical_gene | ||
+ | | please leave for now --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|- | |- | ||
| :wbprocess/marker-construct | | :wbprocess/marker-construct | ||
| ?WBProcess | | ?WBProcess | ||
| Marker_construct | | Marker_construct | ||
+ | | please leave for now --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|- | |- | ||
| :wbprocess/movie | | :wbprocess/movie | ||
| ?WBProcess | | ?WBProcess | ||
| Movie | | Movie | ||
+ | | please leave for now --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|- | |- | ||
| :wbprocess/name | | :wbprocess/name | ||
| ?WBProcess | | ?WBProcess | ||
| Name | | Name | ||
+ | | please leave for now --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|- | |- | ||
| :wbprocess/picture | | :wbprocess/picture | ||
| ?WBProcess | | ?WBProcess | ||
| Picture | | Picture | ||
+ | | please leave for now --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|- | |- | ||
| :wbprocess/process-term | | :wbprocess/process-term | ||
| ?WBProcess | | ?WBProcess | ||
| Process_term | | Process_term | ||
+ | | please leave for now --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|- | |- | ||
| :wbprocess.do-term/do-term | | :wbprocess.do-term/do-term | ||
| ?WBProcess | | ?WBProcess | ||
| DO_term (1) | | DO_term (1) | ||
+ | | please leave for now --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|- | |- | ||
| :wbprocess.historical-gene/gene | | :wbprocess.historical-gene/gene | ||
| ?WBProcess | | ?WBProcess | ||
| Historical_gene (1) | | Historical_gene (1) | ||
+ | | please leave for now --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|- | |- | ||
| :wbprocess.movie/movie | | :wbprocess.movie/movie | ||
| ?WBProcess | | ?WBProcess | ||
| Movie (1) | | Movie (1) | ||
+ | | please leave for now --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|- | |- | ||
| :wbprocess.picture/picture | | :wbprocess.picture/picture | ||
| ?WBProcess | | ?WBProcess | ||
| Picture (1) | | Picture (1) | ||
+ | | please leave for now --[[User:Kyook|Kyook]] 23:42, 12 November 2014 (UTC) | ||
|} | |} |
Latest revision as of 10:52, 2 February 2015
The following attributes are unused in the current Datomic-based DB prototype. It seems likely that many of them could be removed when we switch database.
Attribute | ACeDB Model | ACeDB Tag | Notes | |
---|---|---|---|---|
:2-point-data/linkage | ?2_point_data | Linkage | ||
:2-point-data/locus-2 | ?2_point_data | Locus_2 | ||
:2-point-data.locus-2/locus | ?2_point_data | Locus_2 (1) | ||
:2-point-data.locus-2/variation | ?2_point_data | Locus_2 (2) | ||
:2-point-data.recs-all/fixme | ?2_point_data | Recs_all (4) | Removing because docs make this look inadvertant (thomasd) | |
:ace2so/description | ?Ace2SO | Description | ||
:address.other-phone/type | #Address | Other_phone (2) | Removing for the sake of symmetry (thomasd) | |
:affiliation/affiliation-address | #Affiliation | Affiliation_address | ||
:analysis/species-in-analysis | ?Analysis | Species_in_analysis | ||
:anatomy-term/evidence | ?Anatomy_term | Evidence | Remove (raymond) | |
:anatomy-term/reference | ?Anatomy_term | Reference | Remove (raymond) | |
:anatomy-term/url | ?Anatomy_term | URL | Remove (raymond) | |
:anatomy-term/version | ?Anatomy_term | Version | Remove (raymond) | |
:anatomy-term.version/int-a | ?Anatomy_term | Version (1) | Remove (raymond) | |
:anatomy-term.version/int-b | ?Anatomy_term | Version (2) | Remove (raymond) | |
:antibody/person | ?Antibody | Person | ||
:ao-code/description | ?AO_code | Description | Remove (raymond) | |
:ao-code/remark | ?AO_code | Remark | Remove (raymond) | |
:ao-code.remark/text | ?AO_code | Remark (1) | Remove (raymond) | |
:balancer/locus | ?Balancer | Locus | ||
:cds/concise-description | ?CDS | Concise_description | ||
:cds/confidential-remark | ?CDS | Confidential_remark | ||
:cds/detailed-description | ?CDS | Detailed_description | ||
:cds.concise-description/text | ?CDS | Concise_description (1) | ||
:cds.detailed-description/text | ?CDS | Detailed_description (1) | ||
:cell/go-term | ?Cell | GO_term | Remove ?Cell entirely (raymond) | |
:cell.go-term/go-code | ?Cell | GO_term (2) | Remove ?Cell entirely (raymond) | |
:cell.go-term/go-term | ?Cell | GO_term (1) | Remove ?Cell entirely (raymond) | |
:clone/does-not-hybridize-to | ?Clone | Does_not_hybridize_to | ||
:clone/evidence | ?Clone | Evidence | ||
:clone/gel | ?Clone | Gel | ||
:clone/in-situ | ?Clone | In_Situ | ||
:clone/negative-locus | ?Clone | Negative_locus | ||
:clone/pattern | ?Clone | Pattern | ||
:clone/person | ?Clone | Person | ||
:clone/pmap | ?Clone | pMap | ||
:clone.canonical-for/start | ?Clone | Canonical_for (2) | ||
:clone.canonical-for/stop | ?Clone | Canonical_for (3) | ||
:clone.does-not-hybridize-to/clone | ?Clone | Does_not_hybridize_to (1) | ||
:clone.does-not-hybridize-to/grid | ?Clone | Does_not_hybridize_to (2) | ||
:clone.gel/motif | ?Clone | Gel (1) | ||
:clone.in-situ/start | ?Clone | In_Situ (1) | ||
:clone.in-situ/stop | ?Clone | In_Situ (2) | ||
:clone.inside-rearr/author | ?Clone | Inside_rearr (2) | ||
:clone.negative-locus/author | ?Clone | Negative_locus (2) | ||
:clone.negative-locus/locus | ?Clone | Negative_locus (1) | ||
:clone.outside-rearr/author | ?Clone | Outside_rearr (2) | ||
:clone.pmap/contig | ?Clone | pMap (1) | ||
:clone.pmap/pos1 | ?Clone | pMap (2) | ||
:clone.pmap/pos2 | ?Clone | pMap (3) | ||
:clone.positive-variation/author | ?Clone | Positive_variation (2) | ||
:condition/contained-in | ?Condition | Contained_in | ||
:contig/pmap | ?Contig | pMap | ||
:contig.pmap/start | ?Contig | pMap (1) | ||
:contig.pmap/stop | ?Contig | pMap (2) | ||
:database-field/remark | ?Database_field | Remark | ||
:do-term/broad | ?DO_term | Broad | Remove (Ranjana) | |
:do-term/reference | ?DO_term | Reference | Remove (Ranjana) | |
:do-term/version | ?DO_term | Version | Please keep, DO will introduce versioning (Ranjana) | |
:do-term/worm-disease-model | ?DO_term | Worm_disease_model | Remove (Ranjana) | |
:do-term.worm-disease-model/species | ?DO_term | Worm_disease_model (2) | Remove (Ranjana) | |
:do-term.worm-disease-model/text | ?DO_term | Worm_disease_model (1) | Remove (Ranjana) | |
:embl-dump-info/embl-reference | #EMBL_dump_info | EMBL_reference | ||
:embl-info/location | #EMBL_info | Location | ||
:embl-info/note | #EMBL_info | Note | ||
:embl-info/product | #EMBL_info | Product | ||
:expr-pattern/cds | ?Expr_pattern | CDS | Remove (Daniela) | |
:expr-pattern/cell | ?Expr_pattern | Cell | Remove (Daniela) | |
:expr-pattern/cell-group | ?Expr_pattern | Cell_group | Remove (Daniela) | |
:expr-pattern/construct | ?Expr_pattern | Construct | Populated in WS245 | |
:expr-pattern/pseudogene | ?Expr_pattern | Pseudogene | Remove (Daniela) | |
:expr-pattern.cell/cell | ?Expr_pattern | Cell (1) | Remove (Daniela) | |
:expr-pattern.cell-group/cell-group | ?Expr_pattern | Cell_group (1) | Remove (Daniela) | |
:expr-profile/species | ?Expr_profile | Species | ||
:expression-cluster/go-term | ?Expression_cluster | GO_term | ||
:expression-cluster/mass-spectrometry | ?Expression_cluster | Mass_spectrometry | ||
:expression-cluster/rnaseq | ?Expression_cluster | RNAseq | ||
:expression-cluster/sage-tag | ?Expression_cluster | SAGE_tag | ||
:expression-cluster/tiling-array | ?Expression_cluster | Tiling_array | ||
:expression-cluster.expr-pattern/expr-pattern | ?Expression_cluster | Expr_pattern (1) | ||
:expression-cluster.gene/text | ?Expression_cluster | Gene (2) | ||
:expression-cluster.sage-tag/sage-tag | ?Expression_cluster | SAGE_tag (1) | ||
:expression-cluster.sage-tag/text | ?Expression_cluster | SAGE_tag (2) | ||
:feature/annotation | ?Feature | Annotation | ||
:feature/associated-with-position-matrix | ?Feature | Associated_with_Position_Matrix | ||
:feature/associated-with-transposon | ?Feature | Associated_with_transposon | ||
:feature/associated-with-variation | ?Feature | Associated_with_variation | ||
:feature/defined-by-author | ?Feature | Defined_by_author | ||
:feature/strain | ?Feature | Strain | ||
:feature.associated-with-position-matrix/position-matrix | ?Feature | Associated_with_Position_Matrix (1) | ||
:feature.associated-with-transposon/transposon | ?Feature | Associated_with_transposon (1) | ||
:feature.associated-with-variation/variation | ?Feature | Associated_with_variation (1) | ||
:feature.score/text | ?Feature | Score (2) | ||
:gene/detailed-description | ?Gene | Detailed_description | We could remove this tag; it is no longer used for concise descriptions. kmva 2014-11-05 | |
:gene-cluster/database | ?Gene_cluster | Database | Remove? need to check with Michael P. and Kevin --Kyook (talk) 23:29, 12 November 2014 (UTC). (mp says this can be removed -- thomasd 2015-02-02) | |
:gene-cluster/title | ?Gene_cluster | Title | Remove (--Kyook (talk) 23:29, 12 November 2014 (UTC)) | |
:gene-cluster.database/accession | ?Gene_cluster | Database (3) | ||
:gene-cluster.database/database | ?Gene_cluster | Database (1) | ||
:gene-cluster.database/field | ?Gene_cluster | Database (2) | ||
:gene.detailed-description/text | ?Gene | Detailed_description (1) | ||
:genetic-code/remark | ?Genetic_code | Remark | ||
:go-code/remark | ?GO_code | Remark | ||
:go-code.remark/text | ?GO_code | Remark (1) | Would like to keep this; I have a new GO_code file that uses this tag to hold a description of the GO_code. We could change to a more informative tag name, though. kmva 2014-11-05 | |
:go-term/name | ?GO_term | Name | It might actually be better to use this tag in place of the Term tag (and retire the Term tag). This would be more consistent with the tag name in the GO.obo file. kmva 2014-11-05 | |
:gr-condition/cell | #GR_condition | Cell | ||
:gr-condition/cell-group | #GR_condition | Cell_group | ||
:grid/a1-labelling | ?Grid | A1_labelling | ||
:grid/columns | ?Grid | Columns | ||
:grid/no-stagger | ?Grid | No_stagger | ||
:grid/size | ?Grid | Size | ||
:grid/xy-labelling | ?Grid | XY_labelling | ||
:grid-data/clone | ?Grid_data | Clone | ||
:grid-data/date | ?Grid_data | Date | ||
:grid-data/default-negative | ?Grid_data | Default_negative | ||
:grid-data/grid | ?Grid_data | Grid | ||
:grid-data/hybridizes-to | ?Grid_data | Hybridizes_to | ||
:grid-data/laboratory | ?Grid_data | Laboratory | ||
:grid-data/mapper | ?Grid_data | Mapper | ||
:grid-data/positive-product | ?Grid_data | Positive_product | ||
:grid-row/mixed | ?Grid_row | Mixed | ||
:grid.size/x | ?Grid | Size (1) | ||
:grid.size/y | ?Grid | Size (2) | ||
:grid.xy-labelling/x | ?Grid | XY_labelling (1) | ||
:grid.xy-labelling/y | ?Grid | XY_labelling (2) | ||
:homology-group/evidence | ?Homology_group | Evidence | ||
:homology-group/go-term | ?Homology_group | GO_term | ||
:homology-group/inparanoid-group | ?Homology_group | InParanoid_group | you can axe that one, as we treat it now the same as regular orthologies - Mh6 (talk) | |
:homology-type/nemnog | #Homology_type | nemNOG | wasn't used in the last import, might change again in the future - Mh6 (talk) | |
:homology-type/nog | #Homology_type | NOG | wasn't used in the last import, might change again in the future - Mh6 (talk) | |
:interaction/affinity-capture-ms | ?Interaction | Affinity_capture_MS | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/affinity-capture-rna | ?Interaction | Affinity_capture_RNA | No data yet, but will be used. kmva 2014-11-05 | |
:interaction/biochemical-activity | ?Interaction | Biochemical_activity | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/chromatin-immunoprecipitation | ?Interaction | Chromatin_immunoprecipitation | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/cocrystal-structure | ?Interaction | Cocrystal_structure | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/cofractionation | ?Interaction | Cofractionation | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/construct | ?Interaction | Construct | ||
:interaction/database | ?Interaction | Database | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/deviation-from-expectation | ?Interaction | Deviation_from_expectation | ||
:interaction/dnase-i-footprinting | ?Interaction | DNase_I_footprinting | ||
:interaction/far-western | ?Interaction | Far_western | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/fluorescence-resonance-energy-transfer | ?Interaction | Fluorescence_resonance_energy_transfer | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/from-company | ?Interaction | From_company | ||
:interaction/interactor-overlapping-protein | ?Interaction | Interactor_overlapping_protein | ||
:interaction/neutrality-function | ?Interaction | Neutrality_function | ||
:interaction/p-value | ?Interaction | P_value | ||
:interaction/protein-fragment-complementation-assay | ?Interaction | Protein_fragment_complementation_assay | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/protein-peptide | ?Interaction | Protein_peptide | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/protein-rna | ?Interaction | Protein_RNA | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/reconstituted-complex | ?Interaction | Reconstituted_complex | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction/unaffiliated-construct | ?Interaction | Unaffiliated_construct | ||
:interaction.database/accession | ?Interaction | Database (3) | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction.database/database | ?Interaction | Database (1) | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction.database/field | ?Interaction | Database (2) | Data is in Caltech's curation database. kmva 2014-11-05 | |
:interaction.interactor-overlapping-protein/protein | ?Interaction | Interactor_overlapping_protein (1) | ||
:interactor-info/construct | #Interactor_info | Construct | ||
:interactor-info/inferred-automatically | #Interactor_info | Inferred_automatically | ||
:lab-location/freezer | #Lab_Location | Freezer | ||
:lab-location/liquidn2 | #Lab_Location | LiquidN2 | ||
:lab-location/minus70 | #Lab_Location | Minus70 | ||
:lab-location/remark | #Lab_Location | Remark | ||
:lab-location.remark/text | #Lab_Location | Remark (1) | ||
:laboratory/clean-address | ?Laboratory | Clean_address | ||
:lane/band | #Lane | Band | ||
:lane/band-lengths | #Lane | Band_Lengths | ||
:lane/bands | #Lane | Bands | ||
:lane.band/float | #Lane | Band (1) | ||
:lane.band/text | #Lane | Band (2) | ||
:library/database | ?Library | Database | ||
:library/description | ?Library | Description | ||
:library/life-stage | ?Library | Life_stage | ||
:library/species | ?Library | Species | ||
:library/strain | ?Library | Strain | ||
:library/tissue | ?Library | Tissue | ||
:library/vector | ?Library | Vector | ||
:library.database/accession | ?Library | Database (3) | ||
:library.database/database | ?Library | Database (1) | ||
:library.database/field | ?Library | Database (2) | ||
:life-stage/curated-by | ?Life_stage | Curated_by | ||
:locus/detection-method | ?Locus | Detection_method | ||
:locus/evidence | ?Locus | Evidence | ||
:locus/laboratory | ?Locus | Laboratory | ||
:locus/other-name | ?Locus | Other_name | ||
:locus/remark | ?Locus | Remark | ||
:locus/rflp | ?Locus | RFLP | ||
:locus/snp | ?Locus | SNP | ||
:locus/snp-assay | ?Locus | SNP_assay | ||
:locus/species | ?Locus | Species | ||
:locus/status | ?Locus | Status | ||
:locus/transposon-insertion | ?Locus | Transposon_insertion | ||
:locus/well-ordered | ?Locus | Well_ordered | ||
:locus.other-name/text | ?Locus | Other_name (1) | ||
:locus.remark/text | ?Locus | Remark (1) | ||
:locus.snp-assay/pcr-product | ?Locus | SNP_assay (1) | ||
:locus.snp-assay/text | ?Locus | SNP_assay (2) | ||
:map/author | ?Map | Author | ||
:map/embl-chromosome | ?Map | EMBL_chromosome | ||
:map/flipped | ?Map | Flipped | ||
:map/from-map | ?Map | From_map | ||
:map/includes | ?Map | Includes | ||
:map/map | ?Map | Map | ||
:map/no-cache | ?Map | No_cache | ||
:map/non-graphic | ?Map | Non_graphic | ||
:map/title | ?Map | Title | ||
:map/unit | ?Map | Unit | ||
:map-offset/relative | #Map_offset | Relative | ||
:map-position/multi-ends | #Map_position | Multi_Ends | ||
:map-position/multi-position | #Map_position | Multi_Position | ||
:map-position/with-clone | #Map_position | With_clone | ||
:map-position/with-locus | #Map_position | With_locus | ||
:map-position.multi-ends/max | #Map_position | Multi_Ends (2) | ||
:map-position.multi-ends/min | #Map_position | Multi_Ends (1) | ||
:map-position.multi-position/float | #Map_position | Multi_Position (1) | ||
:map-position.with-clone/clone | #Map_position | With_clone (1) | ||
:map-position.with-locus/locus | #Map_position | With_locus (1) | ||
:map.centre/max | ?Map | Centre (2) | ||
:map.map/map | ?Map | Map (1) | ||
:mass-spec-data/charge-state | #Mass_spec_data | Charge_state | ||
:mass-spec-data/deltacn | #Mass_spec_data | DeltaCN | ||
:mass-spec-data/sp-rank | #Mass_spec_data | Sp_rank | ||
:mass-spec-data/sp-score | #Mass_spec_data | Sp_score | ||
:mass-spec-data/xcorr | #Mass_spec_data | XCorr | ||
:mass-spec-experiment/anatomy-term | ?Mass_spec_experiment | Anatomy_term | ||
:mass-spec-experiment/author | ?Mass_spec_experiment | Author | ||
:mass-spec-experiment/cell-type | ?Mass_spec_experiment | Cell_type | ||
:mass-spec-experiment/false-discovery-rate | ?Mass_spec_experiment | False_discovery_rate | ||
:mass-spec-experiment/genotype | ?Mass_spec_experiment | Genotype | ||
:mass-spec-experiment/laboratory | ?Mass_spec_experiment | Laboratory | ||
:mass-spec-experiment/minimum-ion-proportion | ?Mass_spec_experiment | Minimum_ion_proportion | ||
:mass-spec-experiment/minimum-peptide-length | ?Mass_spec_experiment | Minimum_peptide_length | ||
:method/gene-assemble-method | ?Method | Gene_assemble_method | ||
:method/gf-3-cutoff | ?Method | GF_3_cutoff | ||
:method/gf-5-cutoff | ?Method | GF_5_cutoff | ||
:method/gf-atg-cutoff | ?Method | GF_ATG_cutoff | ||
:method/gf-range | ?Method | GF_range | ||
:method/max-mag | ?Method | Max_mag | ||
:method/min-mag | ?Method | Min_mag | ||
:method/score-by-histogram | ?Method | Score_by_histogram | ||
:method/score-by-offset | ?Method | Score_by_offset | ||
:method/symbol | ?Method | Symbol | ||
:method.gene-assemble-method/float | ?Method | Gene_assemble_method (2) | ||
:method.gene-assemble-method/method | ?Method | Gene_assemble_method (1) | ||
:method.intron-cost/min | ?Method | Intron_cost (3) | ||
:microarray-data/a-vs-b-log-ratio | #Microarray_data | A_vs_B_log_ratio | ||
:microarray-data/a-vs-b-sd | #Microarray_data | A_vs_B_SD | ||
:microarray-data/confidence-level | #Microarray_data | Confidence_level | ||
:microarray-data/p-value | #Microarray_data | P_value | ||
:microarray-results/remark | ?Microarray_results | Remark | ||
:microarray-results.remark/text | ?Microarray_results | Remark (1) | ||
:mixed-grid-row/clone | ?Mixed_grid_row | Clone | ||
:mixed-grid-row.clone/clone | ?Mixed_grid_row | Clone (1) | ||
:molecule/name | ?Molecule | Name | Remove --Kyook (talk) 23:29, 12 November 2014 (UTC) | |
:molecule/remark | ?Molecule | Remark | please keep --Kyook (talk) 23:29, 12 November 2014 (UTC) | |
:molecule.remark/text | ?Molecule | Remark (1) | please keep --Kyook (talk) 23:29, 12 November 2014 (UTC) | |
:motif/db-remark | ?Motif | DB_remark | ||
:motif/db-text | ?Motif | DB_text | ||
:motif/num-mismatch | ?Motif | Num_mismatch | ||
:motif/redundant | ?Motif | Redundant | ||
:motif.db-remark/text | ?Motif | DB_remark (1) | ||
:motif.go-term/go-code | ?Motif | GO_term (2) | ||
:movie/description | ?Movie | Description | Keep (Daniela) | |
:movie/variation | ?Movie | Variation | Keep (Daniela) | |
:oligo/gc | ?Oligo | GC | ||
:oligo/pairwise-scores | ?Oligo | Pairwise_scores | ||
:oligo/score | ?Oligo | Score | ||
:oligo/tm | ?Oligo | Tm | ||
:oligo-set/oligo | ?Oligo_set | Oligo | ||
:oligo-set/target-exons | ?Oligo_set | Target_exons | ||
:oligo-set.target-exons/end | ?Oligo_set | Target_exons (2) | ||
:oligo-set.target-exons/start | ?Oligo_set | Target_exons (1) | ||
:oligo.pairwise-scores/melting-temperature | ?Oligo | Pairwise_scores (3) | ||
:oligo.pairwise-scores/oligo | ?Oligo | Pairwise_scores (1) | ||
:oligo.pairwise-scores/score | ?Oligo | Pairwise_scores (2) | ||
:paper/directory | ?Paper | Directory | Could remove this tag. kmva 2014-11-05 | |
:paper/email | ?Paper | Could keep this? The intent was to use this if we wanted to actually include the text of an email as a paper reference. kmva 2014-11-05 | ||
:paper/original-timestamp | ?Paper | Original_timestamp | Not 100% certain, but I think we could remove this one. kmva 2014-11-05 | |
:paper/species | ?Paper | Species | Would like to keep this. kmva 2014-11-05 | |
:paper.species/species | ?Paper | Species (1) | Would like to keep this. kmva 2014-11-05 | |
:pcr-product/species | ?PCR_product | Species | ||
:pcr-product.oligo/int-b | ?PCR_product | Oligo (2) | ||
:pcr-product.oligo/int-c | ?PCR_product | Oligo (3) | ||
:person/affiliation | ?Person | Affiliation | ||
:person/postgresql-id | ?Person | PostgreSQL_id | ||
:person/publishes-as | ?Person | Publishes_as | ||
:phenotype/do-term | ?Phenotype | DO_term | ask Ranjana --Kyook (talk) 06:25, 13 November 2014 (UTC) | |
:phenotype/short-name | ?Phenotype | Short_name | ask Gary S. --Kyook (talk) 06:25, 13 November 2014 (UTC) | |
:phenotype-info/mixed | #Phenotype_info | Mixed | Wow, I wasn't aware of this tag. Will have to look up its intended use. Might be handy, so please keep for now. --Kyook (talk) 06:25, 13 November 2014 (UTC) | |
:phenotype-info/not | #Phenotype_info | Not | Remove --Kyook (talk) 06:25, 13 November 2014 (UTC) | |
:phenotype.do-term/do-term | ?Phenotype | DO_term (1) | ask Ranjana --Kyook (talk) 06:25, 13 November 2014 (UTC) | |
:phenotype.go-term/go-code | ?Phenotype | GO_term (2) | ask Kimberly --Kyook (talk) 06:25, 13 November 2014 (UTC) | |
:phenotype.short-name/text | ?Phenotype | Short_name (1) | ask Gary S. --Kyook (talk) 06:25, 13 November 2014 (UTC) | |
:picture/evidence | ?Picture | Evidence | Remove (Daniela) | |
:picture/species | ?Picture | Species | Keep (Daniela) | |
:pos-neg-data.gene-2/variation | ?Pos_neg_data | Gene_2 (2) | ||
:pos-neg-data.locus-2/variation | ?Pos_neg_data | Locus_2 (2) | ||
:position-confidence/approximate | #Position_confidence | Approximate | ||
:position-confidence/exact | #Position_confidence | Exact | ||
:position-confidence/inferred-from-gps | #Position_confidence | Inferred_from_GPS | ||
:protein/brigpep | ?Protein | Brigpep | ||
:pseudogene/concise-description | ?Pseudogene | Concise_description | ||
:pseudogene/confidential-remark | ?Pseudogene | Confidential_remark | ||
:pseudogene/detailed-description | ?Pseudogene | Detailed_description | ||
:pseudogene/provisional-description | ?Pseudogene | Provisional_description | ||
:pseudogene.concise-description/text | ?Pseudogene | Concise_description (1) | ||
:pseudogene.detailed-description/text | ?Pseudogene | Detailed_description (1) | ||
:pseudogene.provisional-description/text | ?Pseudogene | Provisional_description (1) | ||
:rearrangement/by-other | ?Rearrangement | By_other | ||
:rearrangement/introgression | ?Rearrangement | Introgression | ||
:rearrangement/url | ?Rearrangement | URL | ||
:rearrangement.locus-inside/author | ?Rearrangement | Locus_inside (2) | ||
:rearrangement.locus-outside/author | ?Rearrangement | Locus_outside (2) | ||
:reconstruction/author | ?Reconstruction | Author | ||
:reconstruction/date | ?Reconstruction | Date | ||
:reconstruction/description | ?Reconstruction | Description | ||
:reconstruction/remark | ?Reconstruction | Remark | ||
:reconstruction.remark/text | ?Reconstruction | Remark (1) | ||
:reference/description | ?Reference | Description | ||
:reference/reference | ?Reference | Reference | ||
:reference/remark | ?Reference | Remark | ||
:reference/species | ?Reference | Species | ||
:reference.remark/text | ?Reference | Remark (1) | ||
:rnai/clone | ?RNAi | Clone | ||
:sage-data/confidence-level | #SAGE_data | Confidence_level | ||
:sage-data/number-of-experiments | #SAGE_data | Number_of_experiments | ||
:sage-data/sequence-quality | #SAGE_data | Sequence_quality | ||
:sage-data/significance | #SAGE_data | Significance | ||
:sage-data/standard-deviation | #SAGE_data | Standard_deviation | ||
:sage-experiment/remark | ?SAGE_experiment | Remark | ||
:sage-experiment/species | ?SAGE_experiment | Species | ||
:sage-experiment.remark/text | ?SAGE_experiment | Remark (1) | ||
:sage-tag/evidence | ?SAGE_tag | Evidence | ||
:sage-tag/predicted-cds | ?SAGE_tag | Predicted_CDS | ||
:sage-tag/pseudogene | ?SAGE_tag | Pseudogene | ||
:sage-tag/remark | ?SAGE_tag | Remark | ||
:sage-tag.predicted-cds/cds | ?SAGE_tag | Predicted_CDS (1) | ||
:sage-tag.pseudogene/pseudogene | ?SAGE_tag | Pseudogene (1) | ||
:sage-tag.remark/text | ?SAGE_tag | Remark (1) | ||
:sequence/agp-fragment | ?Sequence | AGP_fragment | ||
:sequence/anatomy-term | ?Sequence | Anatomy_term | ||
:sequence/archived | ?Sequence | Archived | ||
:sequence/briggsae-canonical | ?Sequence | Briggsae_canonical | ||
:sequence/clone-end-seq-read | ?Sequence | Clone_end_seq_read | ||
:sequence/confidential-remark | ?Sequence | Confidential_remark | ||
:sequence/contains-reads | ?Sequence | Contains_reads | ||
:sequence/crc64 | ?Sequence | CRC64 | ||
:sequence/est-consensus | ?Sequence | EST_consensus | ||
:sequence/flipped | ?Sequence | Flipped | ||
:sequence/from-database | ?Sequence | From_database | ||
:sequence/genomic | ?Sequence | Genomic | ||
:sequence/go-term | ?Sequence | GO_term | ||
:sequence/library-construction | ?Sequence | Library_construction | ||
:sequence/match-type | ?Sequence | Match_type | ||
:sequence/predicted-3 | ?Sequence | Predicted_3 | ||
:sequence/predicted-5 | ?Sequence | Predicted_5 | ||
:sequence/read-coverage | ?Sequence | Read_coverage | ||
:sequence/received | ?Sequence | Received | ||
:sequence/scrna | ?Sequence | scRNA | ||
:sequence/shotgun-complete | ?Sequence | Shotgun_complete | ||
:sequence/snorna | ?Sequence | snoRNA | ||
:sequence/source-exons | ?Sequence | Source_exons | ||
:sequence.agp-fragment/end | ?Sequence | AGP_fragment (3) | ||
:sequence.agp-fragment/sequence | ?Sequence | AGP_fragment (1) | ||
:sequence.agp-fragment/start | ?Sequence | AGP_fragment (2) | ||
:sequence.archived/datetype | ?Sequence | Archived (1) | ||
:sequence.archived/disk | ?Sequence | Archived (2) | ||
:sequence.date/comment | ?Sequence | Date (2) | ||
:sequence.from-database/database | ?Sequence | From_database (1) | ||
:sequence.from-database/version | ?Sequence | From_database (2) | ||
:sequence.gap-right/size | ?Sequence | Gap_right (1) | ||
:sequence.gap-right/text | ?Sequence | Gap_right (2) | ||
:sequence.go-term/go-code | ?Sequence | GO_term (2) | ||
:sequence.go-term/go-term | ?Sequence | GO_term (1) | ||
:sequence.oligo/int-b | ?Sequence | Oligo (2) | ||
:sequence.oligo/int-c | ?Sequence | Oligo (3) | ||
:sequence.oligo/method | ?Sequence | Oligo (4) | ||
:sequence.predicted-3/float | ?Sequence | Predicted_3 (4) | ||
:sequence.predicted-3/int-b | ?Sequence | Predicted_3 (2) | ||
:sequence.predicted-3/int-c | ?Sequence | Predicted_3 (3) | ||
:sequence.predicted-3/method | ?Sequence | Predicted_3 (1) | ||
:sequence.predicted-5/float | ?Sequence | Predicted_5 (4) | ||
:sequence.predicted-5/int-b | ?Sequence | Predicted_5 (2) | ||
:sequence.predicted-5/int-c | ?Sequence | Predicted_5 (3) | ||
:sequence.predicted-5/method | ?Sequence | Predicted_5 (1) | ||
:sequence.source-exons/end | ?Sequence | Source_exons (2) | ||
:sequence.source-exons/start | ?Sequence | Source_exons (1) | ||
:smap-info/align | #SMap_info | Align | ||
:smap-info/content | #SMap_info | Content | ||
:smap-info/max-mag | #SMap_info | Max_mag | ||
:smap-info/method | #SMap_info | Method | ||
:smap-info/min-mag | #SMap_info | Min_mag | ||
:smap-info/mismatch | #SMap_info | Mismatch | ||
:smap-info.align/child-pos | #SMap_info | Align (2) | ||
:smap-info.align/length | #SMap_info | Align (3) | ||
:smap-info.align/parent-pos | #SMap_info | Align (1) | ||
:so-term/derived-from | ?SO_term | Derived_from | ||
:species/g-species | ?Species | G_species | ||
:splice-confirmation/homology | #Splice_confirmation | Homology | ||
:splice-confirmation/mass-spec | #Splice_confirmation | Mass_spec | ||
:splice-confirmation/mrna | #Splice_confirmation | mRNA | ||
:splice-confirmation/ost | #Splice_confirmation | OST | ||
:splice-confirmation/rnaseq | #Splice_confirmation | RNASeq | ||
:splice-confirmation/rst | #Splice_confirmation | RST | ||
:splice-confirmation.rnaseq/analysis | #Splice_confirmation | RNASeq (1) | ||
:splice-confirmation.rnaseq/int | #Splice_confirmation | RNASeq (2) | ||
:strain/contact | ?Strain | Contact | ||
:strain/elevation | ?Strain | Elevation | ||
:strain/picture | ?Strain | Picture | ||
:strain.elevation/float | ?Strain | Elevation (1) | ||
:structure-data/hsqc | ?Structure_data | Hsqc | ||
:structure-data/in-pdb | ?Structure_data | In_pdb | ||
:structure-data/nmr-assigned | ?Structure_data | Nmr_assigned | ||
:structure-data/nmr-structure | ?Structure_data | Nmr_structure | ||
:structure-data/other | ?Structure_data | Other | ||
:structure-data/remark | ?Structure_data | Remark | ||
:structure-data/test-target | ?Structure_data | Test_target | ||
:structure-data.remark/text | ?Structure_data | Remark (1) | ||
:transcript/concise-description | ?Transcript | Concise_description | ||
:transcript/detailed-description | ?Transcript | Detailed_description | ||
:transcript/end-not-found | ?Transcript | End_not_found | ||
:transcript/go-term | ?Transcript | GO_term | ||
:transcript/mrna | ?Transcript | mRNA | ||
:transcript/snlrna | ?Transcript | snlRNA | ||
:transcript/start-not-found | ?Transcript | Start_not_found | ||
:transcript/strna | ?Transcript | stRNA | ||
:transcript.concise-description/text | ?Transcript | Concise_description (1) | ||
:transcript.detailed-description/text | ?Transcript | Detailed_description (1) | ||
:transcript.go-term/go-code | ?Transcript | GO_term (2) | ||
:transcript.go-term/go-term | ?Transcript | GO_term (1) | ||
:transcription-factor/species | ?Transcription_factor | Species | ||
:transgene/author | ?Transgene | Author | ||
:transgene/coinjection-other | ?Transgene | Coinjection_other | ||
:transgene/evidence | ?Transgene | Evidence | ||
:transgene/extrachromosomal | ?Transgene | Extrachromosomal | ||
:transgene/integrated-from | ?Transgene | Integrated_from | ||
:transposon/ltr-region | ?Transposon | LTR_region | ||
:transposon/pseudogene-child | ?Transposon | Pseudogene_child | ||
:transposon-family/db-annotation | ?Transposon_family | DB_annotation | ||
:transposon-family.db-annotation/database | ?Transposon_family | DB_annotation (1) | ||
:transposon-family.db-annotation/longtext | ?Transposon_family | DB_annotation (2) | ||
:transposon.ltr-region/end | ?Transposon | LTR_region (2) | ||
:transposon.ltr-region/start | ?Transposon | LTR_region (1) | ||
:transposon.pseudogene-child/end | ?Transposon | Pseudogene_child (3) | ||
:transposon.pseudogene-child/pseudogene | ?Transposon | Pseudogene_child (1) | ||
:transposon.pseudogene-child/start | ?Transposon | Pseudogene_child (2) | ||
:tree/bootstrap-factor | ?Tree | Bootstrap_Factor | ||
:tree/descriptive-labels | ?Tree | Descriptive_Labels | ||
:tree/hide-bootstraps | ?Tree | Hide_Bootstraps | ||
:tree/no-header | ?Tree | No_Header | ||
:tree/normalization | ?Tree | Normalization | ||
:treenode/bootstrap | ?TreeNode | Bootstrap | ||
:treenode/distance | ?TreeNode | Distance | ||
:treenode/hide-bootstraps | ?TreeNode | Hide_Bootstraps | ||
:treenode/show-bootstrap | ?TreeNode | Show_Bootstrap | ||
:treenode/taxon | ?TreeNode | Taxon | ||
:treenode/xid | ?TreeNode | Id | ||
:variation/amber-uag | ?Variation | Amber_UAG | ||
:variation/dead | ?Variation | Dead | ||
:variation/derived-from-construct | ?Variation | Derived_from_construct | ||
:variation/derived-from-variation | ?Variation | Derived_from_variation | ||
:variation/engineered-allele | ?Variation | Engineered_allele | ||
:variation/expr-pattern | ?Variation | Expr_pattern | ||
:variation/hme0-mating-not-successful | ?Variation | HME0_Mating_not_successful | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook 23:42, 12 November 2014 (UTC) | |
:variation/hme1-mating-rarely-successful | ?Variation | HME1_Mating_rarely_successful | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook 23:42, 12 November 2014 (UTC) | |
:variation/hme2-mating-usually-successful | ?Variation | HME2_Mating_usually_successful | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook 23:42, 12 November 2014 (UTC) | |
:variation/hme3-mating-always-successful | ?Variation | HME3_Mating_always_successful | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook 23:42, 12 November 2014 (UTC) | |
:variation/inversion | ?Variation | Inversion | ||
:variation/linked-to | ?Variation | Linked_to | ||
:variation/me0-mating-not-successful | ?Variation | ME0_Mating_not_successful | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook 23:42, 12 November 2014 (UTC) | |
:variation/me1-mating-rarely-successful | ?Variation | ME1_Mating_rarely_successful | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook 23:42, 12 November 2014 (UTC) | |
:variation/me2-mating-usually-successful | ?Variation | ME2_Mating_usually_successful | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook 23:42, 12 November 2014 (UTC) | |
:variation/me3-mating-always-successful | ?Variation | ME3_Mating_always_successful | Curated through variation phenotype, need to discuss syncing or transferring data, data is not being show on website --Kyook 23:42, 12 November 2014 (UTC) | |
:variation/missense | ?Variation | Missense | ||
:variation/nature-of-variation | ?Variation | Nature_of_variation | ||
:variation/ochre-uaa | ?Variation | Ochre_UAA | ||
:variation/opal-uga | ?Variation | Opal_UGA | ||
:variation/phenotype-remark | ?Variation | Phenotype_remark | Curated through phenotype_info, not sure this is needed here --Kyook 23:42, 12 November 2014 (UTC) | |
:variation/production-method | ?Variation | Production_method | ||
:variation/readthrough | ?Variation | Readthrough | ||
:variation/silent | ?Variation | Silent | ||
:variation/split-into | ?Variation | Split_into | ||
:variation/text | ?Variation | text | ||
:variation/unique | ?Variation | Unique | ||
:variation.amber-uag/text | ?Variation | Amber_UAG (1) | ||
:variation.expr-pattern/expr-pattern | ?Variation | Expr_pattern (1) | ||
:variation.missense/text | ?Variation | Missense (1) | ||
:variation.ochre-uaa/text | ?Variation | Ochre_UAA (1) | ||
:variation.opal-uga/text | ?Variation | Opal_UGA (1) | ||
:variation.phenotype-remark/text | ?Variation | Phenotype_remark (1) | Curated through phenotype_info, not sure this is needed here --Kyook 23:42, 12 November 2014 (UTC) | |
:variation.readthrough/text | ?Variation | Readthrough (1) | ||
:variation.silent/text | ?Variation | Silent (1) | ||
:wbprocess/do-term | ?WBProcess | DO_term | please leave for now --Kyook 23:42, 12 November 2014 (UTC) | |
:wbprocess/historical-gene | ?WBProcess | Historical_gene | please leave for now --Kyook 23:42, 12 November 2014 (UTC) | |
:wbprocess/marker-construct | ?WBProcess | Marker_construct | please leave for now --Kyook 23:42, 12 November 2014 (UTC) | |
:wbprocess/movie | ?WBProcess | Movie | please leave for now --Kyook 23:42, 12 November 2014 (UTC) | |
:wbprocess/name | ?WBProcess | Name | please leave for now --Kyook 23:42, 12 November 2014 (UTC) | |
:wbprocess/picture | ?WBProcess | Picture | please leave for now --Kyook 23:42, 12 November 2014 (UTC) | |
:wbprocess/process-term | ?WBProcess | Process_term | please leave for now --Kyook 23:42, 12 November 2014 (UTC) | |
:wbprocess.do-term/do-term | ?WBProcess | DO_term (1) | please leave for now --Kyook 23:42, 12 November 2014 (UTC) | |
:wbprocess.historical-gene/gene | ?WBProcess | Historical_gene (1) | please leave for now --Kyook 23:42, 12 November 2014 (UTC) | |
:wbprocess.movie/movie | ?WBProcess | Movie (1) | please leave for now --Kyook 23:42, 12 November 2014 (UTC) | |
:wbprocess.picture/picture | ?WBProcess | Picture (1) | please leave for now --Kyook 23:42, 12 November 2014 (UTC) |