Difference between revisions of "Specifications for a GAF for gene-life stage data"
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− | GAF 2.0 for | + | GAF 2.0 for Life_stage data |
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Format: The gene association file is a 17 column tab-delimited file, where 11 columns have to have data and 6 are optional. | Format: The gene association file is a 17 column tab-delimited file, where 11 columns have to have data and 6 are optional. | ||
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{|Class="wikitable" | {|Class="wikitable" | ||
− | |+Mapping of GAF column to gene- | + | |+Mapping of GAF column to gene-life_stage data |
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!Column !! Content !! Required? !! Cardinality !! Example | !Column !! Content !! Required? !! Cardinality !! Example |
Latest revision as of 09:57, 28 March 2014
GAF 2.0 for Life_stage data Format: The gene association file is a 17 column tab-delimited file, where 11 columns have to have data and 6 are optional.
Column | Content | Required? | Cardinality | Example |
---|---|---|---|---|
1 | DB | required | 1 | WB |
2 | DB Object ID | required | 1 | WBGene00007799 |
3 | DB Object Symbol | required | 1 | nrx-1 |
4 | Qualifier | optional | 0 or greater | (no value, leave empty) |
5 | Life_stage ID | required | 1 | WBls:00000xx |
6 | DB:Reference (|DB:Reference) | required | 1 or greater (separate values with pipes) |
WBPaper00041363|WBPaperXXXXXXXX |
7 | Evidence code | required | 1 | IDA |
8 | With (or) From | optional | 0 or greater (separate values with pipes) |
(no value, leave empty) |
9 | Aspect | required | 1 | L (for Life_stage ontology, all annotations have this value) |
10 | DB Object Name | optional | 0 or 1 | (no value, leave empty) |
11 | DB Object Synonym (|Synonym) | optional | 0 or greater | (no value, leave empty) |
12 | DB Object Type | required | 1 | gene (all annotations have this value) |
13 | Taxon | required | 1 or 2 | taxon:6239 |
14 | Date | required | 1 | not sure about the date |
15 | Assigned By | required | 1 | WB |
16 | Annotation Extension | optional | 0 or greater | (no value, leave empty) |
17 | Gene Product Form ID | optional | 0 or greater | (no value, leave empty) |
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