Search results
From WormBaseWiki
Jump to navigationJump to searchCreate the page "GO term" on this wiki! See also the search results found.
- *compare ‘GO_term "GO:000nnnn”’ in the gp_annotation.ace and exp_goid in ExprOA and output: a) count and WBpaper list of papers that have matching GO annotations2 KB (344 words) - 20:49, 10 February 2017
- ...ase to describe relations between entities in the database, e.g. genes and GO terms. **Term3 KB (453 words) - 18:27, 20 September 2023
- term: all stages goid: LS:0000002 definition: All C. elegans development stages, term: embryo goid: LS:0000003 definition: The whole period of embryogenesis, fro19 KB (3,891 words) - 18:26, 17 August 2010
- ...in class, # concise descriptions, # of cloned genes, list of all GO-bp and GO-mf associated with genes in class ===Gene_class term info file===4 KB (704 words) - 18:19, 28 June 2011
- *file format - does dictyBase produce a gpi for GO? See: http://wiki.geneontology.org/index.php/Gene_Product_Data_File_Forma *GO term identifier (already available in Dump Annotation File)1 KB (205 words) - 17:10, 8 November 2012
- =Trial runs with linking GO terms in GSA papers= *only the GO lexicon from AmiGo will be used13 KB (2,118 words) - 16:51, 20 September 2011
- GO term - GO ID mappings2 KB (204 words) - 19:18, 17 November 2011
- Orthology/Homology and the GO annotations for Process, Function and Cell component. 6) #Qualifier - Additions to combine life stage with anatomy term in expression pattern annotation.3 KB (413 words) - 15:51, 18 September 2014
- === GO Alliance slim terms === * We need to update our GO slim terms for WB GO ribbons to be in sync with Alliance5 KB (759 words) - 15:02, 11 September 2019
- ?SO_term Term ?Text Version SOFA_ontology UNIQUE Float // Analogous to GO, the SO version number is only to be attached1 KB (117 words) - 09:34, 5 October 2010
- *Output file: go.ace **Script on tazendra: /home/acedb/kimberly/citace_upload/go/ontology2ace/go_obo2ace/go_obo_to_go_ace.pl15 KB (1,936 words) - 16:29, 29 June 2018
- ...h term, click on the "Remove" button to the right of the particular search term. Clicking on it will bring you new results. ...ase check WormBase Advanced Search for instructions on how to use AQL. Or, go to http://www.acedb.org/Software/whelp/AQL/.2 KB (315 words) - 18:27, 17 August 2010
- The new pipeline for uploading manual GO annotations will be different in that we will now get our manual annotation ...l and InterPro2GO GAF (see below) and the combined file is uploaded to the GO repository.3 KB (495 words) - 15:15, 24 August 2012
- == GO-CAM model/pathway curation with orthology data == - GO term data will address this issue2 KB (303 words) - 18:23, 16 April 2020
- Back to [[GO entity markup]] | align="center" style="background:#f0f0f0;"|'''Linked Term in Abstract'''29 KB (4,227 words) - 18:16, 21 September 2011
- GO Term Enrichment: This table shows terms from the gene ontology that are signific ...nome column has the number of genes in the entire genome annotated to that term.6 KB (964 words) - 18:49, 22 May 2018
- ...gory terms and their mapping, based on previous curation, to a GO term and GO ID. ...an autocomplete to add GO terms which should avoid any future errors in GO term entry.11 KB (1,765 words) - 15:10, 18 February 2014
- In the acedb user account on Tazendra at:/home/acedb/ranjana/GO: #copy the right go.go.<date> file from /home/acedb/ranjana/citace_upload/go_curation/go_dumper_fi4 KB (629 words) - 18:27, 23 November 2020
- -- Simplify info representation; focus on term less the method -- Action Items: Look into GO details page for ideas for rendering table; See SGDs3 KB (423 words) - 18:20, 14 February 2011
- ...lack list and filtering based upon papers already annotated with Component term in gaf file **Organization of categories by task? e.g. GO curation, Phenotype curation, Expression patterns, etc.6 KB (901 words) - 19:21, 29 November 2011
- ...ype2GO-based GO annotations will be handled for future WormBase builds and GO uploads. *If the perturbation is an RNAi experiment, we will only associate the GO annotations with phenotypes resulting from disruption of the primary target7 KB (1,164 words) - 17:54, 19 February 2015
- ...staff can take vacations. They can also help develop new web tools. Short term goal: get low hanging fruits first (SPELL, ModSEEK ...) ...l give a talk about Textpresso central and mining, also have a workshop on GO curation and LEGO.2 KB (339 words) - 18:43, 8 April 2016
- ** Term * We'll only include the Term entries6 KB (834 words) - 17:56, 15 June 2020
- 1. Go to the main page, either by entering its URL http://wormbase.org, or by cli ...any). If a single data record is found, the search routine will sometimes go directly to the Web page for that record (it will automatically do this for3 KB (545 words) - 19:56, 11 August 2010
- ...ene Ontology consortium to specify how gene associations to Gene Ontology (GO) terms would be reported in a tab-delimited download file. http://geneontology.org/docs/go-annotation-file-gaf-format-2.0/12 KB (1,718 words) - 17:45, 5 February 2021
- Term ?Text ...Version UNIQUE Text UNIQUE Text // Lincoln, to store version number of GO2 KB (183 words) - 13:25, 4 October 2010
- * Will go ahead and send emails for only new set of papers (won't resend requests for * Maybe go back to papers that already had a request sent at the 6 month time point5 KB (818 words) - 15:55, 1 November 2018
- 1) Remove the Term tag. The name of the GO_term would be populated in the 2) Add an Alt_id tag to populate secondary IDs as listed in the GO obo3 KB (433 words) - 08:32, 22 June 2015
- ...geal pumping phenotypes that were measured by EPGs be annotated with this term? These questions highlight a need to revisit the pharyngeal phenotype bran ...any other person interested in the group to help with pharyngeal phenotype term organization7 KB (1,073 words) - 16:26, 2 March 2017
- ** Phenotype, anatomy ontologies, GO, etc. === Anatomy term acronyms ===3 KB (427 words) - 15:32, 1 August 2019
- *GO Term [http://mangolassi.caltech.edu/~azurebrd/cgi-bin/testing/amigo/wobr/amigo.c **Main term and children, with annotation numbers (inferred, term and descendant annotations)5 KB (850 words) - 15:32, 5 September 2013
- ...get done in the next 1.5 years (detailed), but include some info of longer term plans and challenges we think we will face. This sketch needs vision of the ...l processes involved in, and cellular localization based on Gene Ontology (GO data)4 KB (574 words) - 01:54, 2 March 2018
- https://github.com/geneontology/go-annotation/blob/master/specs/gpad-gpi-2-0.md ...he GPAD2.0 file, but no action needed as we don't have any negation in our GO OA annotations. || n/a10 KB (1,456 words) - 17:43, 9 November 2023
- ! GO Annotation |'''MF - GO:0016929 SUMO-specific protease activity16 KB (1,999 words) - 18:24, 28 October 2015
- * Based on 3 GO categories and homology * Add tissue-specific expression, and go live4 KB (622 words) - 16:47, 6 August 2014
- 2) sentences from papers already curated by TAIR for GO Cellular Component 3) sentences from papers not curated by TAIR for GO Cellular Component14 KB (2,091 words) - 16:28, 9 December 2010
- Do you want the name of the genes for the Tier IIs, so you can add your GO-terms, etc? == UPR GO Terms & Associated Genes ==10 KB (1,194 words) - 16:35, 13 December 2013
- * Added link in WBPerson term info to Person page with publications showing ** Not sure we came to an agreement; will go ahead with trying this6 KB (982 words) - 15:33, 2 July 2015
- *Not caught up on RNAi and allele curation by end of this term *Logical extensions to GO (we will discuss next week)6 KB (944 words) - 16:25, 1 November 2012
- ...Neurobrowse URL]. Alternatively, Neurobrowse is linked on specific Anatomy Term pages in WormBase. ..." box, at the upper left corner of the NBrowse window, and click the green GO button. For example, one queries for R2AR, a neuron in the male sensory ray2 KB (256 words) - 22:25, 5 August 2019
- ...notype2GO Annotation !! Evidence Code !! Experiment !! Reference !! Manual GO Annotation !! Evidence Code !! Comment !! Recommend Keep Phenotype2GO Annot | hsf-1 || locomotion (GO:0040011) || IMP || RNAi in rrf-3 || 6395, Simmer et al., 2003, others || No5 KB (825 words) - 21:25, 24 June 2013
- ...e follow that defined by [http://geneontology.org/docs/ontology-relations/ GO Relations] where "is a", "part of", and "regulates" are included in inferen 6. Graph display may be faceted by evidence types or ontology aspects (GO only).3 KB (506 words) - 21:32, 30 October 2019
- ''Cellular_component'' -- For linking to a GO term3 KB (320 words) - 10:55, 10 December 2010
- A general summary of the process term. Can be extracted from WormBook if possible. * Mined from GO20 KB (3,088 words) - 19:17, 13 August 2020
- * Still discussing how to handle plasmids/vectors, whether they should go in the ?Clone class (there is precedence) * We will go ahead with considering including all plasmids and vectors (e.g. AddGene & F8 KB (1,218 words) - 17:46, 2 April 2014
- =Different Types of GO Annotations= GO_term "GO:0007191" "IDA" Paper_evidence "WBPaper00006389"17 KB (2,104 words) - 22:44, 17 December 2014
- *GO recently established link outs from PubMed to AmiGO *** gene ontology (go-slim ribbons)4 KB (544 words) - 16:22, 5 January 2017
- ?SO_term Term ?Text Version SOFA_ontology UNIQUE Float // Analogous to GO, the SO version number is only to be attached3 KB (368 words) - 10:15, 1 February 2012
- ...and download the annotations in either a simple three-column format or the GO's gene_association file (GAF) format. ...ow and manually (by me) for the macromolecular interactions. For the long term, having the option to combine the SVMs with both Textpresso searches and wi17 KB (2,749 words) - 20:04, 21 January 2011
- ...o part of the broader plan for Textpresso-based curation pipelines and the GO's Common Annotation Framework. *Categories - gene/protein name, CCC, assay term, verb30 KB (4,868 words) - 14:50, 11 June 2013
