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• Data mining:WormMart
  ...and [http://www.wormbase.org/db/searches/advanced/dumper Batch Sequences] pages. [[Category:User Guide]]
  2 KB (275 words) - 10:40, 31 January 2013
• BASIC PROTOCOL 10: MINING GENE DATA WITH WORMMART
  Web pages for a single Gene, Sequence, or Protein only allow relatively small amounts [[Category:User Guide]]
  3 KB (545 words) - 19:45, 11 August 2010
• BASIC PROTOCOL 8: VIEWING THE C. BRIGGSAE GENOME AND ITS SYNTENY WITH C. ELEGANS
  ...base.org/wiki/index.php/Image:Fig_1_8_03.png). On some ''C. elegans'' Gene pages, there will also be BLASTP hits given against the ''C. briggsae'' genome; c [[Category:User Guide]]
  4 KB (705 words) - 20:02, 11 August 2010
• Acceptable use policy
  Cookies are used by the search pages in order to remember your search settings. Some cookies persist after you e [[Category:User Guide]]
  2 KB (301 words) - 02:21, 1 April 2012
• Pristionchus pacificus
  *Pristionchus WormBase pages (including Orthologs / WGN/CGC-names) ...php/Main_Page WikiOnchus]] ''Pristionchus'' Wiki (including the beginner's guide to the Pristionchus universe)
  4 KB (458 words) - 16:08, 15 December 2011
• UserGuide:Genetic Map
  ...ery WormBase page, or from the Submenu located on each of the Gene Summary pages. When the Genetic Map is accessed via the Main Menu link, a whole-chromosom ...s accessed from the submenu located on the top of each of the Gene Summary pages, a chromosome map is displayed centered upon the gene from which the map wa
  4 KB (720 words) - 18:28, 17 August 2010
• WBConfCall 2014.11.13-Agenda and Minutes
  Majority since last Friday resolved or the user is in direct contact with a curator. ...community at any single point are new/just starting so should adopt a user guide approach/style
  4 KB (610 words) - 13:12, 14 November 2014
• WormBase-Caltech Weekly Calls September 2012
  **Results can be stored and displayed on web pages **2) Training and user interaction
  7 KB (1,074 words) - 17:19, 4 October 2012
• Linking To WormBase
  ...to WormBase. You can link to HTML pages, text-only dumps, images, and XML pages. [[Category:User Guide]]
  6 KB (1,087 words) - 15:07, 19 June 2014
• Caenorhabditis angaria
  *PS1010 WormBase pages (including Orthologs / WGN/CGC-names) [[Category:User Guide]]
  3 KB (437 words) - 16:02, 15 December 2011
• UserGuide:Blast Search
  Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins, 2cd ed. A.D. Baxevanis and B.F.F. Ou ...protein, and can either from Wormbase itself or a sequence supplied by the user. Sequences are automatically provided from WormBase when a BLAST search is
  7 KB (1,234 words) - 18:25, 17 August 2010
• WormBase-Caltech Weekly Calls December 2015
  * Current user guide wiki is outdated * Can we have links to relevant help wiki pages from within the website? Yes, but need to establish standard linking syntax
  5 KB (776 words) - 16:50, 7 January 2016
• UserGuide:Gene Page
  ...contain multiple subclasses with their descriptions and hypertext links to pages containing detailed information on particular subclasses, where available. ...des links to the Sequence report (Gene model) and Protein report (Protein) pages as well as SwissProt database entries, WormPep amino acid sequences and spl
  7 KB (985 words) - 18:28, 17 August 2010
• FIGURE(S)
  ...for ''zyg-1'''''. WormBase organizes its data around a few key hubs. Gene pages are perhaps the most important single such hub; they are intended to give a ...it is given its own Sequence page instead (linked to the Gene and Protein pages). These data are most useful in designing cloning experiments or direct per
  19 KB (3,061 words) - 23:01, 13 August 2010
• WBConfCall 2016.01.07-Agenda and Minutes
  *user friendly forms *updates to curator curation forms to accommodate user submissions
  7 KB (1,249 words) - 17:23, 7 January 2016
• Mining WormBase with Bio::DB::GFF
  <br /> Install BioPerl and either MySQL or PostgreSQL. Read the manual pages on Bio::DB::GFF. This describes the API for loading and querying the databa [[Category:User Guide]]
  11 KB (1,663 words) - 17:45, 16 August 2010
• Downloads
  ...er the genome browser, dump sequences, generate images on the Gene Summary pages, etc. [[Category:User Guide]]
  8 KB (1,219 words) - 22:33, 24 October 2011
• UserGuide:WormMine
  WormMine can operate on custom lists of data. You can save lists from results pages or create them by uploading lists of identifiers. Lists can be used when ru [[Category:User Guide]]
  6 KB (1,056 words) - 21:09, 24 June 2013
• WBConfCall 2013.11.21-Agenda and Minutes
  ...github.com/WormBase/website/issues/2021 2021]] WikiPathway images on Topic pages - '''NOT HELPDESK''' ...will reply to questions related to WormMine. Wen will make sure that every user gets response from us.
  6 KB (909 words) - 21:56, 21 November 2013
• WormBase-Caltech Weekly Calls November 2012
  *Once in place, we can build pre-canned queries that we can embed in WormBase pages (maybe in response to help desk inquiries) *Open system: any registered user can modify any pathway
  7 KB (1,123 words) - 16:39, 6 December 2012

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