User contributions
From WormBaseWiki
Jump to navigationJump to search- 03:01, 24 September 2007 diff hist +358 N SOPs New page: == Internal Documentation == This page provides an area to collect standard operating procedures for each of the WormBase centers. * [[Project-wide_documentation|Project-wide documentati...
- 02:52, 24 September 2007 diff hist +2 Main Page
- 02:51, 24 September 2007 diff hist +4,000 N Wiki objectives and usage guidelines New page: == About the WormBase Wiki == This document describes the objectives and usage guidelines of the WormBase Wiki. Wikis are community-driven, collaborative websites. Users may freely post ... current
- 02:50, 24 September 2007 diff hist +2 Main Page
- 02:45, 24 September 2007 diff hist +1,968 N AceDB classes New page: This is a list of the most prominent classes in use in the AceDB database employed by WormBase. To display the current model of any class, include the following text in your documentation...
- 02:31, 24 September 2007 diff hist +1,169 N Data mining New page: == Data Model == # About the WormBase data model - ''how data is stored and structured at WormBase'' # AceDB classes - ''A comprehensiv...
- 02:28, 24 September 2007 diff hist +1,866 N RSS news feeds New page: == About RSS feeds at WormBase == WormBase news feeds (using the RSS format) provide a convenient mechanism for staying up-to-date with new datasets, features, and system status. Browsers...
- 02:26, 24 September 2007 diff hist +2,123 N Mailing lists New page: == Public Mailing Lists == WormBase maintains four public/semi-public mailing lists: '''wormbase-announce@wormbase.org''' Announcements of general interest to the community, including a...
- 02:25, 24 September 2007 diff hist +62,608 N Former How To Build A WormBase Mirror New page: = Hardware requirements = WormBase runs on a Unix or Linux system (with the caveat that Mac OS X is, essentially, a Unix system). A relatively fast system with generous memory is strongly...
- 02:19, 24 September 2007 diff hist +12,620 N Virtual Machines New page: = Overview = "Virtual Machines" (or VMX) are self-contained packages of everything you need to use WormBase locally. To keep downloads small, we've split virtual machines into two compone...
- 02:16, 24 September 2007 diff hist +1,796 N Local installation of WormBase New page: Imagine being able to run WormBase on your own local computer, unencumbered from server load at www.wormbase.org, network latency, or even the need for a network connection. Run BLAST sear...
- 02:05, 24 September 2007 diff hist +48 N Gene Prediction New page: This page has been moved. Please see: NGASP current
- 01:00, 24 September 2007 diff hist +40 Main Page →Community Resources
- 00:59, 24 September 2007 diff hist +3,761 N Job Openings New page: '''Please place job postings on the Worm Community Forum at ''' http://www.wormbase.org/forums/ Note: you need to register again at the Forum. ---- ''' Old submissions ''' ---- 11. ...
- 00:45, 24 September 2007 diff hist +1,721 N Citing WormBase New page: Please cite WormBase as follows: WormBase web site, http://www.wormbase.org, release WSXX, date XXX. Use the current WS release number and release date in your citation. This informatio...
- 00:40, 24 September 2007 diff hist +2 FAQs →TEMPLATE
- 00:39, 24 September 2007 diff hist +8,128 N FAQs New page: __NOTOC__ '''Contents:''' #top - 0-9 A B C D E F G H I J K L M N O [[...
- 00:31, 24 September 2007 diff hist +23 Main Page →Using WormBase
- 00:29, 24 September 2007 diff hist +56 Glossary of terms
- 00:28, 24 September 2007 diff hist +56 Glossary of terms
- 00:27, 24 September 2007 diff hist +13 Glossary of terms
- 00:25, 24 September 2007 diff hist -96 Glossary of terms
- 00:22, 24 September 2007 diff hist +8,107 N Glossary of terms New page: '''Contents:''' [#top Top] - [#0.E2.80.939 0–9] [#A A] [#B B] [#C C] [#D D] [#E E] [#F F] [#G G] [#H H] [#I I] [#J J] [#K K] [#L L] [#M M] [#N N] [#O O] [#P P] [#Q Q] [#R R] [#S S] [...
- 22:12, 23 September 2007 diff hist +7,619 N UserGuide:Blast Search New page: OVERVIEW: http://www.wormbase.org/wiki/images/I_blast1.jpg BLAST is a method for searching either protein or DNA databases with either a protein or a DNA query sequence. Positive matches ...
- 22:08, 23 September 2007 diff hist +5,791 N UserGuide:Browse Genome New page: Browse Genome OVERVIEW You have a sequence that you want to work on -- a predicted gene, a cDNA, an STS marker -- or a sequence about which you have some descriptive traits. You want to e...
- 22:04, 23 September 2007 diff hist +2,278 N UserGuide:Simple Search New page: A simple search allows users to search WormBase for keywords contained in the database objects. The search can be broad (Anything) or can be restricted by searching for: 1) a particular ob...
- 21:57, 23 September 2007 diff hist +81 UserGuide:Release Notes
- 21:54, 23 September 2007 diff hist +1,216 N UserGuide:Release Notes New page: How can users find out what is new in each WormBase release? Actually all the information is in the notes for each new WS release, which can be directly accessed from the WormBase homepage...
- 21:52, 23 September 2007 diff hist +2,835 N UserGuide:General Description New page: An Overview of The WormBase Homepage GENERAL DOCUMENTATION CAVEAT: ALWAYS UNDER CONSTRUCTION At this writing, Wormbase is very much a dynamic, ongoing project. A good consequence of...
- 21:50, 23 September 2007 diff hist -511 User Guide
- 21:44, 23 September 2007 diff hist +2,793 N User Guide New page: GENERAL DOCUMENTATION CAVEAT: ALWAYS UNDER CONSTRUCTION At this writing, Wormbase is very much a dynamic, ongoing project. A good consequence of this is that new features and options are...
- 21:41, 23 September 2007 diff hist -1,693 WormBaseComparativeGenomicsTools
- 21:40, 23 September 2007 diff hist +6,147 N WormBaseComparativeGenomicsTools New page: * [#Genomic_Alignments <span class="tocnumber">1</span> <span class="toctext">Genomic Alignments</span>] ** [#Methods <span class="tocnumber">1.1</span> <span class="toctext">Methods</span...
- 21:39, 23 September 2007 diff hist 0 Other nematodes
- 21:39, 23 September 2007 diff hist +1,470 N Other nematodes New page: * '''Wikionchus''', a wiki for the Diplogastrid ''Pristionchus pacificus''<nowiki>: </nowiki>[http://www.pristionchus.org/wikionchus/index.php/Main_Page [1]] * '''WormBook section - [http:...
- 21:36, 23 September 2007 diff hist +7,777 N WS179 New page: = Release Notes = <nowiki> New release of WormBase WS179, Wormpep179 and Wormrna179 Mon Jul 30 12:21:01 BST 2007 WS179 was built by [Paul] ========================================...
- 21:36, 23 September 2007 diff hist +6,834 N WS178 New page: == Release Notes == <nowiki> New release of WormBase WS178, Wormpep178 and Wormrna178 Wed Jul 4 12:56:45 BST 2007 WS178 was built by Gary Williams ===============================...
- 21:35, 23 September 2007 diff hist +8,846 N WS177 New page: == Release Notes == <nowiki> New release of WormBase WS177, Wormpep177 and Wormrna177 Fri Jun 15 15:39:40 BST 2007 WS177 was built by Michael Han =================================...
- 21:34, 23 September 2007 diff hist +1 WS176
- 21:34, 23 September 2007 diff hist -1 WS176
- 21:33, 23 September 2007 diff hist +1 WS176
- 21:33, 23 September 2007 diff hist +7,646 N WS176 New page: <nowiki> new release of WormBase WS176, Wormpep176 and Wormrna176 Mon May 21 11:58:06 BST 2007 WS176 was built by Mary Ann Tuli =====================================================...
- 21:32, 23 September 2007 diff hist +6,435 N WS175 New page: <nowiki> New release of WormBase WS175, Wormpep175 and Wormrna175 Fri May 4 16:29:43 BST 2007 WS175 was built by [Anthony] ========================================================...
- 21:31, 23 September 2007 diff hist +8,126 N WS174 New page: = Release Notes = <nowiki> WS174 was built by Gary Williams ====================================================================== This directory includes: i) database.WS174.*.ta...
- 21:31, 23 September 2007 diff hist +6,176 N WS173 New page: = Release Notes = <nowiki> New release of WormBase WS173, Wormpep173 and Wormrna173 Fri Mar 23 18:22:22 GMT 2007 WS173 was built by Michael Han ===================================...
- 21:30, 23 September 2007 diff hist +6,910 N WS172 New page: <nowiki>New release of WormBase WS172, Wormpep172 and Wormrna172 Fri Mar 2 16:35:57 GMT 2007 WS172 was built by Mary Ann, with a little help from her friends ======================...
- 21:30, 23 September 2007 diff hist +6,090 N WS171 New page: <nowiki>New release of WormBase WS171, Wormpep171 and Wormrna171 Thu Feb 8 15:28:27 GMT 2007 WS171 was built by Anthony ============================================================...
- 21:29, 23 September 2007 diff hist +7,694 N WS170 New page: = Release Notes = <nowiki> New release of WormBase WS170, Wormpep170 and Wormrna170 Fri Jan 19 09:31:14 GMT 2007 WS170 was built by Paul Davis ====================================...
- 21:28, 23 September 2007 diff hist +7,163 N WS180 New page: <nowiki> New release of WormBase WS180, Wormpep180 and Wormrna180 Fri Aug 17 13:41:37 BST 2007 WS180 was built by Anthony ==========================================================...
- 21:28, 23 September 2007 diff hist +8,579 N WS181 New page: <nowiki> New release of WormBase WS181, Wormpep181 and Wormrna181 Fri Sep 7 11:40:20 BST 2007 WS181 was built by Gary Williams ====================================================...