User contributions
From WormBaseWiki
Jump to navigationJump to search- 21:44, 23 September 2007 diff hist +2,793 N User Guide New page: GENERAL DOCUMENTATION CAVEAT: ALWAYS UNDER CONSTRUCTION At this writing, Wormbase is very much a dynamic, ongoing project. A good consequence of this is that new features and options are...
- 21:41, 23 September 2007 diff hist -1,693 WormBaseComparativeGenomicsTools
- 21:40, 23 September 2007 diff hist +6,147 N WormBaseComparativeGenomicsTools New page: * [#Genomic_Alignments <span class="tocnumber">1</span> <span class="toctext">Genomic Alignments</span>] ** [#Methods <span class="tocnumber">1.1</span> <span class="toctext">Methods</span...
- 21:39, 23 September 2007 diff hist 0 Other nematodes
- 21:39, 23 September 2007 diff hist +1,470 N Other nematodes New page: * '''Wikionchus''', a wiki for the Diplogastrid ''Pristionchus pacificus''<nowiki>: </nowiki>[http://www.pristionchus.org/wikionchus/index.php/Main_Page [1]] * '''WormBook section - [http:...
- 21:36, 23 September 2007 diff hist +7,777 N WS179 New page: = Release Notes = <nowiki> New release of WormBase WS179, Wormpep179 and Wormrna179 Mon Jul 30 12:21:01 BST 2007 WS179 was built by [Paul] ========================================...
- 21:36, 23 September 2007 diff hist +6,834 N WS178 New page: == Release Notes == <nowiki> New release of WormBase WS178, Wormpep178 and Wormrna178 Wed Jul 4 12:56:45 BST 2007 WS178 was built by Gary Williams ===============================...
- 21:35, 23 September 2007 diff hist +8,846 N WS177 New page: == Release Notes == <nowiki> New release of WormBase WS177, Wormpep177 and Wormrna177 Fri Jun 15 15:39:40 BST 2007 WS177 was built by Michael Han =================================...
- 21:34, 23 September 2007 diff hist +1 WS176
- 21:34, 23 September 2007 diff hist -1 WS176
- 21:33, 23 September 2007 diff hist +1 WS176
- 21:33, 23 September 2007 diff hist +7,646 N WS176 New page: <nowiki> new release of WormBase WS176, Wormpep176 and Wormrna176 Mon May 21 11:58:06 BST 2007 WS176 was built by Mary Ann Tuli =====================================================...
- 21:32, 23 September 2007 diff hist +6,435 N WS175 New page: <nowiki> New release of WormBase WS175, Wormpep175 and Wormrna175 Fri May 4 16:29:43 BST 2007 WS175 was built by [Anthony] ========================================================...
- 21:31, 23 September 2007 diff hist +8,126 N WS174 New page: = Release Notes = <nowiki> WS174 was built by Gary Williams ====================================================================== This directory includes: i) database.WS174.*.ta...
- 21:31, 23 September 2007 diff hist +6,176 N WS173 New page: = Release Notes = <nowiki> New release of WormBase WS173, Wormpep173 and Wormrna173 Fri Mar 23 18:22:22 GMT 2007 WS173 was built by Michael Han ===================================...
- 21:30, 23 September 2007 diff hist +6,910 N WS172 New page: <nowiki>New release of WormBase WS172, Wormpep172 and Wormrna172 Fri Mar 2 16:35:57 GMT 2007 WS172 was built by Mary Ann, with a little help from her friends ======================...
- 21:30, 23 September 2007 diff hist +6,090 N WS171 New page: <nowiki>New release of WormBase WS171, Wormpep171 and Wormrna171 Thu Feb 8 15:28:27 GMT 2007 WS171 was built by Anthony ============================================================...
- 21:29, 23 September 2007 diff hist +7,694 N WS170 New page: = Release Notes = <nowiki> New release of WormBase WS170, Wormpep170 and Wormrna170 Fri Jan 19 09:31:14 GMT 2007 WS170 was built by Paul Davis ====================================...
- 21:28, 23 September 2007 diff hist +7,163 N WS180 New page: <nowiki> New release of WormBase WS180, Wormpep180 and Wormrna180 Fri Aug 17 13:41:37 BST 2007 WS180 was built by Anthony ==========================================================...
- 21:28, 23 September 2007 diff hist +8,579 N WS181 New page: <nowiki> New release of WormBase WS181, Wormpep181 and Wormrna181 Fri Sep 7 11:40:20 BST 2007 WS181 was built by Gary Williams ====================================================...
- 21:26, 23 September 2007 diff hist +5 Nematode resequencing and diversity →Solexa Resequencing of two Wild C. elegans Isolates
- 21:26, 23 September 2007 diff hist -993 Nematode resequencing and diversity
- 21:25, 23 September 2007 diff hist +5,609 N Nematode resequencing and diversity New page: This is a community page for registering information about future and pending nematode (re)sequencing projects. Please describe briefly the species, population or isolate you will be (re)s...
- 21:24, 23 September 2007 diff hist +78 BASIC PROTOCOL 10: MINING GENE DATA WITH WORMMART
- 21:23, 23 September 2007 diff hist +26 BASIC PROTOCOL 9: FINDING SEQUENCE SIMILARITIES WITH BLAST
- 21:23, 23 September 2007 diff hist +52 BASIC PROTOCOL 8: VIEWING THE C. BRIGGSAE GENOME AND ITS SYNTENY WITH C. ELEGANS
- 21:22, 23 September 2007 diff hist +104 BASIC PROTOCOL 7: USING THE GENOME BROWSER
- 21:21, 23 September 2007 diff hist +52 BASIC PROTOCOL 6: SEARCHING FOR GENE PRODUCTS WITH PARTICULAR SEQUENCE MOTIFS
- 21:20, 23 September 2007 diff hist +26 BASIC PROTOCOL 5: FINDING PROTEIN FEATURES
- 21:20, 23 September 2007 diff hist +26 BASIC PROTOCOL 4: EXAMINING A MOLECULAR SEQUENCE IN C. ELEGANS
- 21:19, 23 September 2007 diff hist +52 BASIC PROTOCOL 3: EXAMINING A GENE IN C. ELEGANS
- 21:19, 23 September 2007 diff hist +26 BASIC PROTOCOL 2: PERFORMING A DATABASE SEARCH
- 21:16, 23 September 2007 diff hist +26 BASIC PROTOCOL 1: NAVIGATING THE WormBase HOME PAGE
- 21:06, 23 September 2007 diff hist -8 BASIC PROTOCOL 1: NAVIGATING THE WormBase HOME PAGE
- 21:05, 23 September 2007 diff hist +8 BASIC PROTOCOL 1: NAVIGATING THE WormBase HOME PAGE
- 20:53, 23 September 2007 diff hist +3,312 N INTERNET RESOURCES New page: http://wormbase.org ''The main Web site for WormBase. It is meant to be slightly less bleeding-edge than the development site, but to be maximally stable.'' http://dev.wormbase.org ''Th...
- 20:52, 23 September 2007 diff hist +18,971 N FIGURE(S) New page: '''(http://www.wormbase.org/wiki/index.php/Image:Fig_1_8_01.png) The front Web page of WormBase, showing a general database search for''zyg-1'' and the Web Site Directory'''. This page giv...
- 20:51, 23 September 2007 diff hist -26 KEY REFERENCES
- 20:51, 23 September 2007 diff hist +1,329 N KEY REFERENCES New page: Brenner, 1974. See above. ''The beginning of modern C. elegans research, this article remains vividly readable and gives a clear introduction to the goals and tactics of worm genetics.'' ...
- 20:49, 23 September 2007 diff hist +31,128 N COMMENTARY New page: '''Background Information''' WormBase contains information about the genomic sequence of ''C. elegans'', its genes and their products, and its higher-level traits such as gene expression ...
- 20:47, 23 September 2007 diff hist +3,940 N ALTERNATE PROTOCOL 1: INSTALLING AND RUNNING WormBase LOCALLY New page: All of the protocols above assume that a user will work with one of the main WormBase servers, with his or her own computer operating merely as a client. However, for people who want to us...
- 20:45, 23 September 2007 diff hist +1,623 N BASIC PROTOCOL 12: EXAMINING THE GENOMIC CONTENT OF A CLASSICAL GENETIC INTERVAL New page: Within a defined physical or genetic interval, what gene markers and SNPs are available for mapping a newly identified mutation? WormBase provides a page specifically for this problem. Ne...
- 20:44, 23 September 2007 diff hist +4,343 N BASIC PROTOCOL 11: DOWNLOADING A BATCH OF SEQUENCES New page: In analyses of the ''C. elegans'' genome, it can be useful to have such things as the complete set of 5¢ flanking regions for all known or predicted genes in ''C. elegans''. One way Wor...
- 20:42, 23 September 2007 diff hist +3,307 N BASIC PROTOCOL 10: MINING GENE DATA WITH WORMMART New page: Web pages for a single Gene, Sequence, or Protein only allow relatively small amounts of data to be analyzed at a time; yet the rise of functional genomics has made it useful and necessary...
- 20:41, 23 September 2007 diff hist +2,499 N BASIC PROTOCOL 9: FINDING SEQUENCE SIMILARITIES WITH BLAST New page: This protocol describes how to BLAST a sequence against the sequences in WormBase. Further discusion of the BLAST algorithm can be found in ''UNITS 3.3, 3.4, & 3.11''. '''''Necessary ...
- 20:40, 23 September 2007 diff hist +4,347 N BASIC PROTOCOL 8: VIEWING THE C. BRIGGSAE GENOME AND ITS SYNTENY WITH C. ELEGANS New page: At least six species in the ''Caenorhabditis'' genus have morphology and genetics close enough to ''C. elegans'' that they can be classed as its siblings (Cho et al., 2004; Kiontke et al.,...
- 20:39, 23 September 2007 diff hist 0 Searching WormBase for Information About C. elegans (Wiley) →UNIT 1.8 Searching WormBase for Information About Caenorhabditis elegans
- 20:37, 23 September 2007 diff hist +7,277 N BASIC PROTOCOL 7: USING THE GENOME BROWSER New page: All the sections of WormBase described so far consist mainly of written text. However, organisms have a text of their own, the genomic DNA sequence, within which important biological featu...
- 20:35, 23 September 2007 diff hist +1,702 N BASIC PROTOCOL 6: SEARCHING FOR GENE PRODUCTS WITH PARTICULAR SEQUENCE MOTIFS New page: One way to identify all ''C. elegans'' proteins sharing a given PFAM or InterPro motif is to check that motif's WormBase entry. One advantage of such searches is that hypertext links are g...
- 20:34, 23 September 2007 diff hist +3,030 N BASIC PROTOCOL 5: FINDING PROTEIN FEATURES New page: WormBase has, in addition to Gene and Sequence pages, Protein records that give the known or predicted details of a gene's protein product(s). '''''Necessary Resources''''' ''Hardware'' ...