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This is a summary of what we need to get out of modENCODE

5 main areas

The Transcriptome
Chromatin Function
Histone Variants
Regulatory Elements
The 3' UTRome

Datasets available from modmine:

title description DCCid design experimentDate publicReleaseDate embargoDate
3' UTR 454 sequencing pilot - alignments The 3' untranslated region (3'UTR) constitutes a major site of post-transcriptional regulation of gene expression. Sequence elements in the 3'UTR interact with trans-acting regulators such as microRNAs that affect translation and stability. The overall aim is to use a 3'RACE cloning-sequencing stragety to identify the 3'UTRs of C. elegans transcripts and explore their heterogeneity in different developmental stages and tissues. 992 transcript_identification_design Thu Nov 12 00:00:00 GMT 2009 Thu Nov 12 00:00:00 GMT 2009 Tue Aug 03 01:00:00 BST 2010

We Need to generate an ?Analysis object for each experiment:

See ModENCODE Analysis & metadata discussion