Data mining:WormMart:Example 3
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Jump to navigationJump to searchDownload the set of all RNAi experiments that resulted in an embryonic lethal (Emb) phenotype, and in which the target genes are classified as serine/threonine kinases.
- Start a new WormMart query and;
- Select the latest database and the RNAi dataset
- Select the latest database and the RNAi dataset
- Within the Filter section;
- Under Phenotype Annotation, Enable the Phenotype Inc. Descendents filter, and select the embryonic lethal option,
- Within the lower Dataset section;
- For the Second Dataset select GO Term as we will use this dataset to filter for serine/threonone kinases,
- For the Second Dataset select GO Term as we will use this dataset to filter for serine/threonone kinases,
- In the 2'nd dataset Identification:Limit to GO Term ID(s) section, click the <browse> button to bring up a GO Term search page [HERE]
- Type the search term serine threonine kinase into the Search box, and click <Search GO>, which brings you [HERE]
- Looking through the result list, GO:0004674 (protein serine/threonine kinase activity) seems best,
- Back on the MartView FILTER page, Enable the Limit to GO Term ID(s) filter, and paste GO:0004674 into the text box,
- The above selection is shown [HERE],
- Click <next> to proceed to the OUTPUT page.
- On the OUTPUT page;