Citace upload report

Goals for upload report

• Summary of the uploaded data classes/objects - this summary should be blind to requests from curators and should alert Caltech to missing data classes or severe changes in numbers of objects within preexisting data classes
• Summary of curation work - this summary should be curator driven, in some cases the summary will require a more involved aceperl query to get at the actual annotation rather than a straight data class object number.

Data classes/types curated and sent to Hinxton

For each data type, please indicate what information you want to know upon Citace data testing and what information you want to include the report to Hinxton.

Data class/type	Curation focus	Postgres Tables ( oa tables)	Curator	Current Citace dump stat	Requested stat(s) for Citace report	Requested stats for build release
antibody	C. elegans antibodies	abp_	Xiaodong Wang	#antibody objects #Paper-antibody links
anatomy	Anatomy terms and function	N/A	Raymond Lee	#anatomy terms #anatomy function objects
concise	Concise Description	con_	Ranjana Kishore, Kimberly Van Auken	#Genes with Concise_description
construct	Constructs used in various classes	cns_	Karen Yook, Daniela Raciti, Xiaodong Wang	None	# total papers curated for construct #new papers curated for construct average # constructs curated/new paper
disease	Worm models of human disease	dis_	Ranjana Kishore	#DO_terms #Gene with Disease_relevance
exprpat	Expression pattern of genes	exp_	Daniela Raciti	#Expr_pattern #Gene with Expr_pattern #Papers with Expr_pattern
gene cluster	phylogenetic profile clusters	N/A	Karen	none	# gene cluster objects
go	Gene ontology annotation		Kimberly Van Auken, Ranjana Kishore	#Genes with GO_term Total Gene--GO_term links
gene regulation	Gene regulation	grg_	Xiaodong Wang	#interaction? #Interaction with Regulatory #Paper with interaction? #molecule with interaction?
gene interaction	Genetic and physical interactions	int_	Chris Grove, Gary Schindelman, Kimberly Van Auken, Karen Yook	# interactions(total?) #physical interactions #genetic interactions #predicted interactions #papers with interactions	#new papers curated for genetic interactions
Microarray	microarray	N/A	Wen Chen	#Microarray_experiment #expression_clusters #Papers with microarray_experiment #papers with expression clusters
molecule	Drug/Chemical/Small molecule objects	mop_	Karen Yook	#Molecules with RNAi #Molecule with Variation #Molecule with Interaction #Molecule with WBProcess	# new papers associated with a Molecule
movie	Movies	mov_	Daniela Raciti	none
paper	Papers	pap_	Kimberly	#papers Total paper--gene links
person	People	two_	Cecilia	#persons
phenotype	Annotation of phenotypes to variations, strains, rearrangements, transgenes	app_	Karen Yook	#total Variations with Phenotype #total Variations with Phenotype_not_observed #total Transgenes with Phenotype #total Strains with Phenotype #molecules with variation	# new papers curated for variation phenotype average# phenotypes/new paper
picture	figures from papers	pic_	Daniela Raciti	#pictures
biological_topic	Topic curation	pro_	Karen Yook	none	# total topics #new topics #topics with pathway data (data in pathway tag) # papers associated with all topics #new papers associated with topic
process_term	Process term creation	prt_	Karen Yook	#topics	see biological topic stats above
RNAi	RNAi sequence and phenotype curation	rna_	Chris Grove, Gary Schindelman, Wen Chen	#RNAi with Phenotype #RNAi with Phenotype_not_observed #papers with rnai
transgene	Transgene object curation	trp_	Karen Yook	#transgenes #paper with transgene total paper transgene links	# new papers curated for transgenes average # transgenes/new paper