CSHL documentation

The WormBase Cold Spring Harbor team is in charge of developing, maintaining, and hosting WormBase. This page contains links to documentation relating to those topics.

Much of this documentation will be obsolete shortly. Please see Developer documentation for up-to-date documents.

Development

Javascript libraries - Javascript libraries in use at WormBase
- Using collapsible sections - API for DHTML open/close sections
- Balloon Tooltips - API and architecture for AJAX/DHTML-based tooltips
Session management - API and architecture for CGI::Session-based state memory and user authentication
RSS implementation - Documentation and caveats concerning the WormBase RSS implementation
Converting GFF2 to GFF3 - Converting Wormbase GFF data from GFF2 to GFF3
- GFF3 features (C. elegans) - GFF3 features included in the C. elegans GFF3 file
- GFF3 features (C. briggsae) - GFF3 features included in the C. briggsae GFF3 file
GFF3 validation - GFF3 Validator Code Base
N-Browse installation & interaction data - Wormbase N-Browse installation and preparation of Wormbase interaction data
Interaction display in the gene page - Interaction Display in the Gene Page
BLAST/BLAT Page - BLAST/BLAT page and databases
Importing protein structure data - Importing protein structure data from TargetDB and PDB
Importing protein structure data images - Importing protein structure images for structure data
Importing PFAM images - Importing protein structure images for PFAM domains on the gene page
Geographic displays - Geographic map displays