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• WBConfCall 2020.11.05-Agenda and Minutes
  4) To be proposed: new tag in the Relations Ontology class to capture the exact text string to be used in GO GAF 2.2 files (Kimberly/M *Gene sets change every release, so have to do the recomputes, but in the interim
  5 KB (890 words) - 18:36, 5 November 2020
• Progress Report 2011
  ='''WormBase Gene Ontology Progress Report, December 2011'''= {| class="wikitable" style="text-align:center"
  13 KB (1,830 words) - 16:40, 13 December 2012
• Old pipeline for disease data
  ...e. This is similar to a gene being attached to more than one GO term. If a gene needs to be attached to a unrelated disease, enter all data on a new line, '''Field 15 OMIM gene for Disease Rel:'''
  14 KB (2,085 words) - 20:27, 7 July 2022
• WormBase-Caltech Weekly Calls January 2015
  ...n received latest update, CGC very busy with strains generated through new gene engineering techniques *Gene Function and Interaction google docs (Chris, Gary S., Karen, Kimberly)
  10 KB (1,453 words) - 18:52, 4 February 2015
• WormBase-Caltech Weekly Calls July 2018
  * Consider grouping evidence per gene (Expr_pattern objects) ...solution is implementation of ?Phenotype_experiment/?Phenotype_annotation class to query out a table
  7 KB (1,062 words) - 14:41, 2 August 2018
• Generation of automated descriptions
  ==Obtaining gene sets== ====Obtaining a set of genes and gene names====
  65 KB (9,380 words) - 22:39, 5 July 2018
• Gene Regulation
  ...ne_regulation objects, ?YH objects, and ?Interaction objects into a single class, ?Interaction. The proposed ?Physical_interaction model has also been conso ...oduct XREF Interaction #Interactor_info // PCR_product of the interacting gene or protein, e.g. Yeast Two Hybrid experiments
  59 KB (8,367 words) - 22:00, 14 December 2018
• ISB2014 Babbitt
  1. domain organization - thioredoxin fold class many SF in this fold class with additional domains - do chemistry differently
  13 KB (1,803 words) - 19:13, 11 April 2014
• Gene Ontology
  ...made corresponding BP term less granular, from positive regulation to just gene-specific transcription from pol II promoter ======[[Processing Gene and Protein Names for Searches and Curation]]======
  30 KB (3,904 words) - 18:45, 13 May 2020
• WormBase-Caltech Weekly Calls February 2017
  * Have a simple mockup for the display of disease data on a gene report page: https://docs.google.com/presentation/d/1YuD4_-mPS2AhIfaX41M8II * Ranjana working on a new ?Disease_model_annotation class and model
  7 KB (1,073 words) - 16:26, 2 March 2017
• June
  ...and see if better to pull out the PI's e-mail address from the laboratory class or if better they specify it Karen: Knudra strains: gene replacements submission has allele and phenotype
  8 KB (1,231 words) - 22:06, 25 July 2017
• WormBase-Caltech Weekly Calls 2023
  {| class="wikitable" Gene "WBGeneID" - Optional
  36 KB (4,994 words) - 17:27, 14 February 2024
• Sequence Feature
  *If a region is necessary and sufficient to drive a reporter gene, then mark it as an 'enhancer' or 'silencer'. ...ression when mutated or deleted, but is not sufficient to drive a reporter gene, then we cannot assert that it is an enhancer or a TF binding site. Mark it
  24 KB (3,538 words) - 17:50, 15 December 2015
• WormBase-Caltech Weekly Calls September 2012
  **Browse genes/proteins by class/GO annotation Transcription Factor -to- Target Gene Associations
  7 KB (1,074 words) - 17:19, 4 October 2012
• FAQs
  ...ned at two of the four WormBase groups, and so a lot of data pertaining to gene predictions and other features annotated on to the genome are created and m ...formation from the published literature (from hand-curated descriptions of gene function to details of individual RNAi experiments).
  67 KB (10,954 words) - 09:22, 19 February 2013
• First-pass data types explained
  |||Gene Symbol (main/other/sequence) '''Genes studied in this paper''' [http://taze ...n=fc&field=genefunction (flagged-done)]: ||Discussion of new function of a gene||''"A Novel Role for the SMG-1 Kinase in Lifespan and Oxidative Stress Resi
  21 KB (3,156 words) - 23:03, 13 August 2010
• GSA Markup SOP
  ...to linked classes of the form are added automatically to the corresponding class entity list. ...8.9, does not necessarily need to be added, as it should already be on the gene list).<br>
  17 KB (2,790 words) - 20:50, 10 January 2017
• Paper Tables in Postgres
  ...hould be treated in subsequent pipelines, RNAi data, and the status of the gene-paper associations. genestudied_done - this tag is placed on papers when the gene-paper associations are complete.
  25 KB (3,238 words) - 16:42, 8 November 2019
• SOP for generating GO files for citace and GO consortium uploads
  ...notations that are at the top of the file and map to an unknown gene, i.e. Gene : " " {| class="wikitable"
  23 KB (3,744 words) - 15:12, 23 December 2022
• WS244 Models.wrm
  < Gene ?Gene XREF Map > Gene ?Gene XREF Map
  235 KB (23,325 words) - 10:33, 3 July 2014

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