WBConfCall 2023.05.04-Agenda and Minutes

From WormBaseWiki
Jump to navigationJump to search

Agenda and Minutes

HelpDesk

scRNA from Whole-body gene expression atlas of an adult metazoan

  • Web site https://wormseq.org/
  • Curatable data (need to decide what to take on)
    • Interactive graph TPM / % cell expressing per gene (planned)
    • Enriched gene set per cell (planned)
    • Link out to their web site and analysis tools (planned)
    • Inclusion on http://single-cell.wormbase.org/
      • if we have the files in .h5ad format we can try to set it up
    • Likely house keeping genes
      • these could be brought in via expression cluster
    • Makers used for cell cluster ID
      • integrate into anatomy pages
    • Ligand-receptor expression informed cell-cell interaction
      • for this and the following items Hinton does not have enough manpower to deal with it
    • Transcription factor code per cell type
    • cis-acting sites for cell types

IWM

  • Booth
    • received this morning an email from the contractor for booth logistics
      • carpeting
      • electrical and extension cords
      • furniture
  • Swag
    • General WB swag
    • Community curation swag
    • microPublication swag