Difference between revisions of "WBConfCall 2013.10.17-Agenda and Minutes"
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== Themed Curation == | == Themed Curation == | ||
− | * collaborate | + | * collaborate to curate the protein folding pathways for WS241 |
= Curation Focus ideas for themed releases = | = Curation Focus ideas for themed releases = |
Revision as of 16:28, 17 October 2013
Contents
Agenda
WormMine WS239
- maybe JD can give an overview of the new things
- Thoughts, reactions?
database URL/URIs
- where should we store these?
- acedb + website flat file
- website flat file only with only database name and description stored in acedb
- can there be an easier way to update the URL/URIs on the web
ABM 2014
- when?
- where?
Release Themes
- protein folding / pathways WS241
- ncRNA / specific ncRNAs (lincRNA/snoRNAs) WS242
Minutes
WormMine
- 3d build time, checkpoints used to resume
- sequences for proteins and genomic features for all species except C.sp 5 and C.sp.11
- richer classes to query (example RNAi, etc.)
- link to JDs wiki:
- CDS locations not included in WS239
URLs / URIs
- current: flatfile in the github repository (problem: wrong formatted commits)
- future: potentially an update form/site
- proposal: remove the URLs from database (to make it clear the repository is the canonical source)
- proposal: remove the URL_constructor from model
ABM
- early next year
- Hinxton
Nameserver
- JSON dumper too slow
- delay between GeneAce <=> NameDB synch
- make sure that NameDB <=> GeneAce is synched weekly
- proposal: do a nightly JSON dump
- proposal: put the database on the cloud
InterMine
- call for letter of support for their new funding cycle
Themed Curation
- collaborate to curate the protein folding pathways for WS241
Curation Focus ideas for themed releases
ncRNAs
- we could add ncRNAs to the other non-cores from other databases (Hinxton) and look through literature (CalTech)