Difference between revisions of "User:Mh6"

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=== short version  ===
 
=== short version  ===
  
I am working in the wormbase group at the Sanger Institute and at the moment responsible for:  
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I am working in the wormbase group at the Wellcome Trust Genome campus and responsible for:  
  
*looking after wiki edits
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*wormbook mirror at http://wormbook.sanger.ac.uk  
*our local wormbook mirror at http://wormbook.sanger.ac.uk  
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*wormbase mirror at http://wormbase.sanger.ac.uk  
*our local wormbase mirror at http://wormbase.sanger.ac.uk  
 
 
*refactoring / rewriting pipeline scripts  
 
*refactoring / rewriting pipeline scripts  
*our local Perl installation for the pipeline
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*our worm EnsEMBL pipeline/database
*our worm EnsEMBL databases (COMPARA and CORE)
 
  
 
=== interests  ===
 
=== interests  ===
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*cDNAs / ESTs from my previous work at the German cDNA consortium  
 
*cDNAs / ESTs from my previous work at the German cDNA consortium  
 
*transcriptome analysis of Pongo pygmaeus (Orangutan)  
 
*transcriptome analysis of Pongo pygmaeus (Orangutan)  
*SNP association studies for complex diseaes (like asthma)  
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*SNP association studies for complex diseaes (asthma)  
 
*lab automatition (Beckmann/Tecan)  
 
*lab automatition (Beckmann/Tecan)  
*antimicrobial peptides
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*de-novo design of antimicrobial peptides
  
 
==== IT related  ====
 
==== IT related  ====
  
*postgeSQL (preferred) , mySQL / Oracle / ObjectStore (if it has to be)
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*postgeSQL (preferred) , mySQL / Oracle / ObjectStore
*Ruby / Perl / Python (mainly)
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*Ruby / Perl / Python
 
*Java / C++ / C  
 
*Java / C++ / C  
 
*SML / OCAML (touched it during some Informatics courses)  
 
*SML / OCAML (touched it during some Informatics courses)  
*FreeBSD / GNU-Darwin / Linux on Power / BioRuby / Scientific Ruby / OpenSputnik
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*FreeBSD / GNU-Darwin / Linux on PowerPC / BioRuby / Scientific Ruby / OpenSputnik
  
 
=== other things  ===
 
=== other things  ===
  
 
proposal for GFF3 alignment format: [[GFF3specProposal|GFF3specProposal]]
 
proposal for GFF3 alignment format: [[GFF3specProposal|GFF3specProposal]]

Revision as of 10:28, 19 January 2011

Michael Han from the Sanger Institute in Cambridge, UK.

Responsible for orthology predictions and the Sanger mirror.

short version

I am working in the wormbase group at the Wellcome Trust Genome campus and responsible for:

interests

Biology related

  • cDNAs / ESTs from my previous work at the German cDNA consortium
  • transcriptome analysis of Pongo pygmaeus (Orangutan)
  • SNP association studies for complex diseaes (asthma)
  • lab automatition (Beckmann/Tecan)
  • de-novo design of antimicrobial peptides

IT related

  • postgeSQL (preferred) , mySQL / Oracle / ObjectStore
  • Ruby / Perl / Python
  • Java / C++ / C
  • SML / OCAML (touched it during some Informatics courses)
  • FreeBSD / GNU-Darwin / Linux on PowerPC / BioRuby / Scientific Ruby / OpenSputnik

other things

proposal for GFF3 alignment format: GFF3specProposal