Difference between revisions of "User:Mh6"
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=== short version === | === short version === | ||
| − | I am working in the wormbase group at the | + | I am working in the wormbase group at the Wellcome Trust Genome campus and responsible for: |
| − | * | + | *wormbook mirror at http://wormbook.sanger.ac.uk |
| − | + | *wormbase mirror at http://wormbase.sanger.ac.uk | |
| − | * | ||
*refactoring / rewriting pipeline scripts | *refactoring / rewriting pipeline scripts | ||
| − | + | *our worm EnsEMBL pipeline/database | |
| − | *our worm EnsEMBL | ||
=== interests === | === interests === | ||
| Line 20: | Line 18: | ||
*cDNAs / ESTs from my previous work at the German cDNA consortium | *cDNAs / ESTs from my previous work at the German cDNA consortium | ||
*transcriptome analysis of Pongo pygmaeus (Orangutan) | *transcriptome analysis of Pongo pygmaeus (Orangutan) | ||
| − | *SNP association studies for complex diseaes ( | + | *SNP association studies for complex diseaes (asthma) |
*lab automatition (Beckmann/Tecan) | *lab automatition (Beckmann/Tecan) | ||
| − | *antimicrobial peptides | + | *de-novo design of antimicrobial peptides |
==== IT related ==== | ==== IT related ==== | ||
| − | *postgeSQL (preferred) , mySQL / Oracle / ObjectStore | + | *postgeSQL (preferred) , mySQL / Oracle / ObjectStore |
| − | *Ruby / Perl / Python | + | *Ruby / Perl / Python |
*Java / C++ / C | *Java / C++ / C | ||
*SML / OCAML (touched it during some Informatics courses) | *SML / OCAML (touched it during some Informatics courses) | ||
| − | *FreeBSD / GNU-Darwin / Linux on | + | *FreeBSD / GNU-Darwin / Linux on PowerPC / BioRuby / Scientific Ruby / OpenSputnik |
=== other things === | === other things === | ||
proposal for GFF3 alignment format: [[GFF3specProposal|GFF3specProposal]] | proposal for GFF3 alignment format: [[GFF3specProposal|GFF3specProposal]] | ||
Revision as of 10:28, 19 January 2011
Michael Han from the Sanger Institute in Cambridge, UK.
Responsible for orthology predictions and the Sanger mirror.
short version
I am working in the wormbase group at the Wellcome Trust Genome campus and responsible for:
- wormbook mirror at http://wormbook.sanger.ac.uk
- wormbase mirror at http://wormbase.sanger.ac.uk
- refactoring / rewriting pipeline scripts
- our worm EnsEMBL pipeline/database
interests
- cDNAs / ESTs from my previous work at the German cDNA consortium
- transcriptome analysis of Pongo pygmaeus (Orangutan)
- SNP association studies for complex diseaes (asthma)
- lab automatition (Beckmann/Tecan)
- de-novo design of antimicrobial peptides
- postgeSQL (preferred) , mySQL / Oracle / ObjectStore
- Ruby / Perl / Python
- Java / C++ / C
- SML / OCAML (touched it during some Informatics courses)
- FreeBSD / GNU-Darwin / Linux on PowerPC / BioRuby / Scientific Ruby / OpenSputnik
other things
proposal for GFF3 alignment format: GFF3specProposal
