Difference between revisions of "Data mining:WormMart:Example 3"
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Revision as of 18:42, 11 August 2010
Download the set of all RNAi experiments that resulted in an embryonic lethal (Emb) phenotype, and in which the target genes are classified as serine/threonine kinases.
- Start a new WormMart query and;
- Select the latest database and the RNAi dataset
- Select the latest database and the RNAi dataset
- Within the Filter section;
- Under Phenotype, Enable the Limit to Phenotype Primary Name filter, and select the embryonic lethal option,
- Within the lower Dataset section;
- For the Second Dataset select GO Term as we will use this dataset to filter for serine/threonone kinases,
- Within the Go Term's Filter section, Enable the Limit to GO Term ID(s) filter, and enter GO:0004674 (protein serine/threonine kinase activity).
- Within the RNAi Attribute section;
- In the RNAi section, select RNAi WB ID,
- In the Phenotype section, select Observed Phen Info (merged),
- In the Inhibits Gene section, select Gene Info (merged),
- In the Experiment section, select Author (merged)
- Click <Results> button to produce the results shown [HERE].
