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| − | <center><b>
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| − | <font size="5" color="Blue">[[WormBase_Consortium]] Scientific Advisory Board Meeting
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| − | [[File:Caltechlogo.gif|frame|none]]California Institute of Technology, February 3rd - 4th 2011 | + | = Meeting list = |
| − | </font>
| + | [[2018_Advisory_Board_Meeting | 2018 SAB Meeting]] |
| − | </b></center>
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| − | __TOC__
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| − | <b>
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| − | ==Wednesday 2nd Feb – Pre-Meeting (WormBase central)==
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| − | (Advisory Board not required to attend this session)
| + | [[2016_Advisory_Board_Meeting | 2016 SAB Meeting]] |
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| − | 9:00 - 9:15 </b>delegates arrive
| + | [[2014_Advisory_Board_Meeting | 2014 SAB Meeting]] |
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| − | <b>9:15 - 9:30 </b>pre-pre-meeting coffee
| + | [[2013_Advisory_Board_Meeting | 2013 SAB Meeting]] |
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| − | <b>9:30 – 18:00</b> Put right the World
| + | [[2011_Advisory_Board_Meeting | 2011 SAB Meeting]] |
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| − | Potential Discussion topics
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| − | <b>
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| − | * Release cycle
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| − | </b>
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| − | ** Implications of less frequent releases
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| − | ** Strategies for "as live" display of certain data types
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| − | <b>
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| − | * Gene-structure curation
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| − | </b>
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| − | ** Manual versus automatic-RNASeq-guided (and how we might do the latter)
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| − | ** Which genomes should be manually curated?
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| − | ** Community annotation of tierIII genomes
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| − | ** Should we invest resources into "semi-automatic" annotation of 3rd party genomes?
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| − | <b>
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| − | * New species
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| − | </b>
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| − | ** Minimal requirements for integration into WormBase(
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| − | *** Submission to ENA/Genbank? Gene-set?
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| − | ** Support for "tier IV" (transcriptome-only) / "tier V" (genome-only) worms
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| − | ** Support for "in-progress" genome projects (''cf'' Ensembl pre-sites)
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| − | <b>
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| − | * (Re-)sequencing
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| − | </b>
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| − | ** What should the elegans reference sequence be?
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| − | *** Re-sequencing a standard N2 isolate and make available from CGC.
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| − | **** This has been discussed and proposed a number of times, but has never progressed from "That's a really good idea" :(
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| − | **** Requires willing lab to prep large number of samples
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| − | **** Requires money for new tech seq run
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| − | ** Handling 1000s of elegans mutant and wild isolate strain genomes?
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| − | *** Representation of non-reference variants of genes/features etc.
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| − | ** Chip-seq and other large datasets - where should the be stored to maximise usage but cut overhead?
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| − | <b>
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| − | * (Re-)distribution of tasks within the consortium
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| − | </b>
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| − | ** Array probe mapping
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| − | ** RNAi target identification
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| − | ** ''C.elegans'' monthly clone submission
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| − | <b>
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| − | * Visualisation
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| − | </b>
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| − | ** GBrowse: making it -seq friendly
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| − | ** Interaction browser: what shall we use?
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| − | <b>
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| − | * website development
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| − | </b>
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| − | ** implications of freeze on current website development - should we make this public?
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| − | ** will existing developments be incorporated into new website at start?
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| − | | |
| − | ==Thursday 3rd Feb – Millikan Board Room==
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| − | | |
| − | === 9:00 - 12:00: Overview, Website / UI ===
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| − | | |
| − | * Introduction: Where we are; Hinxton Reorganization - (Paul Sternberg; 15 min)
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| − | | |
| − | * Slot for new Hinxton PIs (Paul Kersey and Matt Berriman; 30 mins)
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| − | * User interface
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| − | ** Site usage; introduction to the new site (Todd; 30 minutes)
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| − | ** Tour of the new website (Abby; 30 minutes)
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| − | | |
| − | * Process and pathway curation and display (Karen; 10 minutes)
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| − | * Data Integration/Data Mining - WormMart (Ruihua; 10 minutes)
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| − | | |
| − | ===13:00 – 15:00 Build, Sequence curation and analysis, other nematodes===
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| − | | |
| − | * Build update - Kevin Howe (20 mins)
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| − | * C. elegans(+ Tier II) Manual curation and projects? - Paul D. (20 mins)
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| − | * Genetic data - Mary Ann (presented by a Hinxton surrograte; 15 mins)
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| − | * Non-elegans species - an update - Michael/Kevin (15 mins)
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| − | * Large scale datasets (curation/modENCODE) - Gary W. (30 mins)
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| − | ** microarray and SPELL -Wen C. (5 min)
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| − | * Tier II genome (re)submissions
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| − | | |
| − | ===15:00 – 15:30 Break===
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| − | | |
| − | ===15:30 - 17:00: Literature Curation===
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| − | * Literature curation introducton : Gary Schindelman (update on stats) - 5 minutes
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| − | | |
| − | * Ontology Annotator
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| − | ** Juancarlos Chan - general introduction of OA
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| − | **Xiaodong Wang - developing interaction OA
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| − | | |
| − | * Picture curation : Daniela Raciti - 10 minutes
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| − | * Virtual Worm Overview : Chris Grove - 2 minutes
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| − | | |
| − | * Gene Function Curation - concise descriptions (update on numbers, curation approach)
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| − | | |
| − | * Collaboration with other Databases/Projects - automation (ARRA), BioGRID, GO
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| − | **GSA Arun/Karen
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| − | ** Automatic Triage - Using Support Vector Machine (SVM) (Ruihua; 10 minutes)
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| − | | |
| − | *WormBook (Jane Mendel, 10 minutes)
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| − | | |
| − | ===17:00 - 17:30: General Discussion===
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| − | * to be determined during talks
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| − | | |
| − | ==Friday 4th Feb – Millikan Board Room==
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| − | ===8:30 – 9:00 Advisors breakfast===
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| − | | |
| − | ===9:30 – 12:00 Advisors summary report===
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| − | | |
| − | ===12:00 – 13:00 Lunch===
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| − | | |
| − | ===13:00 – Discussion===
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| − | | |
| − | '''(Advisory Board not required to attend this session)'''
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| − | | |
| − | == Arrivals/Departures ==
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| − | | |
| − | <b>Arrive</b>
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| − | * Hinxton Crew - Pasadena Tuesday afternoon/evening?
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| − | <b>Depart</b>
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| − | | |
| − | * Hinxton Crew minus Michael - Pasadena Sunday before lunch?
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| − | * Michael P. - Pasadena Friday lunch?
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