Difference between revisions of "WBConfCall 2014.02.20-Agenda and Minutes"
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= Agenda = | = Agenda = | ||
− | * | + | == WormMine 240 on staging - Abby == |
− | + | * I've noticed some issues, please help me find them all before I rebuild | |
− | + | * http://staging.wormbase.org/tools/wormmine/begin.do | |
− | + | ||
+ | == Outstanding Help Desk issues == | ||
# Help desk e-mail: Question regarding terms in annotation files (gff) (From: Assaf Gordon, Tue, November 12, 2013) | # Help desk e-mail: Question regarding terms in annotation files (gff) (From: Assaf Gordon, Tue, November 12, 2013) | ||
# Annotate Motif feature for use on other genomes (from Paul Sternberg, https://github.com/WormBase/website/issues/2001) | # Annotate Motif feature for use on other genomes (from Paul Sternberg, https://github.com/WormBase/website/issues/2001) | ||
# Searching for relevant rearrangements, a la Mapping Data table on legacy site (from Monica Colaiacovo, https://github.com/WormBase/website/issues/2340) | # Searching for relevant rearrangements, a la Mapping Data table on legacy site (from Monica Colaiacovo, https://github.com/WormBase/website/issues/2340) | ||
+ | # tkr gene class lab association (from Peter Barrett, Tue, February 18, 2014, https://github.com/WormBase/website/issues/2420) | ||
+ | # C06A1.4 link to sequence (gene + nt) does not work. (from Alexandra Bezler, Thu, February 20, 2014, https://github.com/WormBase/website/issues/2424) | ||
+ | # C06A1.4 is annotated as a 'coding pseudogene'. definition? (from Alexandra Bezler, Thu, February 20, 2014, https://github.com/WormBase/website/issues/2425) | ||
+ | |||
+ | == WS242 == | ||
+ | * should be on the FTP site next week | ||
+ | * includes O.volvulus fixes for the Mitochondrion and CGC-names | ||
+ | * added N.americanus (clade Vb)as Tier III <- from Makedonka | ||
+ | * includes ncRNA updates for Tier IIs (and ncRNA biogenesis topic work) | ||
+ | * import of Inparanoid 8 | ||
+ | * includes descriptions from UniProt for C.elegans CDSes | ||
+ | * please send anything for the release notes | ||
+ | |||
+ | == Minutes == | ||
+ | |||
+ | === SAB Meeting === | ||
+ | * October 6-7, 2014 | ||
+ | |||
+ | === WS240 WormMine === | ||
+ | * WormMine on staging; let Abby know of anything broken or missing | ||
+ | * Duplicate lines (one real and one empty object) | ||
+ | * Expr_pattern missing? | ||
+ | |||
+ | === Outstanding help desk === | ||
+ | * Assaf Gordon e-mail (Paul Davis will respond) | ||
+ | * Annotate Motif feature for other genomes; possible and in the pipeline | ||
+ | * Rearrangments table and search; not yet ported over from legacy, but recognized as useful; in the pipeline | ||
+ | * tkr gene class attribution; Chris will forward request to Tim Schedl | ||
+ | * Coding pseudogene question (Paul Davis responding) | ||
+ | |||
+ | === WS242 === | ||
+ | * See notes above | ||
+ | * On FTP server early next week | ||
+ | * Send Michael Paulini release notes stuff (e.g. Topic Curation) '''before/during weekend''' | ||
+ | |||
+ | === WS241 === | ||
+ | *Goes into production next week |
Latest revision as of 16:36, 24 February 2014
Contents
Agenda
WormMine 240 on staging - Abby
- I've noticed some issues, please help me find them all before I rebuild
- http://staging.wormbase.org/tools/wormmine/begin.do
Outstanding Help Desk issues
- Help desk e-mail: Question regarding terms in annotation files (gff) (From: Assaf Gordon, Tue, November 12, 2013)
- Annotate Motif feature for use on other genomes (from Paul Sternberg, https://github.com/WormBase/website/issues/2001)
- Searching for relevant rearrangements, a la Mapping Data table on legacy site (from Monica Colaiacovo, https://github.com/WormBase/website/issues/2340)
- tkr gene class lab association (from Peter Barrett, Tue, February 18, 2014, https://github.com/WormBase/website/issues/2420)
- C06A1.4 link to sequence (gene + nt) does not work. (from Alexandra Bezler, Thu, February 20, 2014, https://github.com/WormBase/website/issues/2424)
- C06A1.4 is annotated as a 'coding pseudogene'. definition? (from Alexandra Bezler, Thu, February 20, 2014, https://github.com/WormBase/website/issues/2425)
WS242
- should be on the FTP site next week
- includes O.volvulus fixes for the Mitochondrion and CGC-names
- added N.americanus (clade Vb)as Tier III <- from Makedonka
- includes ncRNA updates for Tier IIs (and ncRNA biogenesis topic work)
- import of Inparanoid 8
- includes descriptions from UniProt for C.elegans CDSes
- please send anything for the release notes
Minutes
SAB Meeting
- October 6-7, 2014
WS240 WormMine
- WormMine on staging; let Abby know of anything broken or missing
- Duplicate lines (one real and one empty object)
- Expr_pattern missing?
Outstanding help desk
- Assaf Gordon e-mail (Paul Davis will respond)
- Annotate Motif feature for other genomes; possible and in the pipeline
- Rearrangments table and search; not yet ported over from legacy, but recognized as useful; in the pipeline
- tkr gene class attribution; Chris will forward request to Tim Schedl
- Coding pseudogene question (Paul Davis responding)
WS242
- See notes above
- On FTP server early next week
- Send Michael Paulini release notes stuff (e.g. Topic Curation) before/during weekend
WS241
- Goes into production next week