Difference between revisions of "WormBase Model:Condition"
From WormBaseWiki
Jump to navigationJump to search| (One intermediate revision by the same user not shown) | |||
| Line 17: | Line 17: | ||
////////////////////////////////// | ////////////////////////////////// | ||
| − | ?Condition Life_stage ?Life_stage | + | ?Condition Life_stage ?Life_stage //life stage of the worms |
Sex UNIQUE Hermaphrodite | Sex UNIQUE Hermaphrodite | ||
Male | Male | ||
| Line 26: | Line 26: | ||
Strain ?Strain // added for Microarry_result [030127 krb] | Strain ?Strain // added for Microarry_result [030127 krb] | ||
Preparation ?Text // added for Microarray_result [030127 krb] | Preparation ?Text // added for Microarray_result [030127 krb] | ||
| − | Temperature Int | + | Temperature Int //temperature of the experiment |
| − | Genotype ?Text | + | Genotype ?Text //record genotype when strain name is not available. |
| − | Other ?Text | + | Other ?Text |
| − | Relationship Contains ?Condition XREF Contained_in | + | Relationship Contains ?Condition XREF Contained_in //The following tags are for samples with time sequence, for example, L1 sample precedes L2 samples, but not really used. |
Contained_in ?Condition XREF Contains | Contained_in ?Condition XREF Contains | ||
Precedes ?Condition XREF Follows | Precedes ?Condition XREF Follows | ||
Follows ?Condition XREF Precedes | Follows ?Condition XREF Precedes | ||
| − | Reference ?Paper // | + | Reference ?Paper //Paper that defines the condition. |
| − | Tissue ?Anatomy_term // | + | Tissue ?Anatomy_term //for samples that are not whole worm but only a tissue part. |
| − | Treatment ?Text // | + | Treatment ?Text //treatment of the sample. |
| − | SAGE_experiment ?SAGE_experiment XREF Sample | + | SAGE_experiment ?SAGE_experiment XREF Sample //refers to SAGE experiment |
Analysis ?Analysis XREF Sample | Analysis ?Analysis XREF Sample | ||
Remark ?Text #Evidence | Remark ?Text #Evidence | ||
| Line 43: | Line 43: | ||
== Proposed Changes == | == Proposed Changes == | ||
| + | |||
| + | Wen: It is strange that ?Condition XREF to SAGE experiment but not Microarray experiment. It is not consistent. | ||
== unused tags == | == unused tags == | ||
Latest revision as of 22:58, 6 December 2010
Curator Comments/Description
Model
//////////////////////////////////
//
//?Condition class
//
//////////////////////////////////
?Condition Life_stage ?Life_stage //life stage of the worms
Sex UNIQUE Hermaphrodite
Male
Female //not all worms are elegans!
Unknown
Food Text
Exposure_time Text
Strain ?Strain // added for Microarry_result [030127 krb]
Preparation ?Text // added for Microarray_result [030127 krb]
Temperature Int //temperature of the experiment
Genotype ?Text //record genotype when strain name is not available.
Other ?Text
Relationship Contains ?Condition XREF Contained_in //The following tags are for samples with time sequence, for example, L1 sample precedes L2 samples, but not really used.
Contained_in ?Condition XREF Contains
Precedes ?Condition XREF Follows
Follows ?Condition XREF Precedes
Reference ?Paper //Paper that defines the condition.
Tissue ?Anatomy_term //for samples that are not whole worm but only a tissue part.
Treatment ?Text //treatment of the sample.
SAGE_experiment ?SAGE_experiment XREF Sample //refers to SAGE experiment
Analysis ?Analysis XREF Sample
Remark ?Text #Evidence
Proposed Changes
Wen: It is strange that ?Condition XREF to SAGE experiment but not Microarray experiment. It is not consistent.
unused tags
Hermaphrodite
Male
Female
Exposure_time
Contains
Contained_in
