Data mining

Data Model

1. About the WormBase data model - how data is stored and structured at WormBase
2. AceDB classes - A comprehensive list of AceDB classes
3. AceDB classes tutorial -Examples and descriptions of commonly accessed classes at WormBase
4. GFF2 features - Descriptions of features contained in the WormBase GFF2 genome annotation files

Query Languages

1. AQL tutorial - Using the AceDB query language, AQL -- DEPRECATED: moved to new site
2. WQL tutorial - Using the WormBase query language, WQL -- DEPRECATED: moved to new site

WormMine

Link to documentation

SimpleMine

SimpleMine User's Guide: https://wiki.wormbase.org/index.php/UserGuide:SimpleMine

APIs

AcePerl, a Perl interface to AceDB/WormBase

1. Mining AceDB/WormBase with AcePerl

Bio::DB::GFF

1. Mining WormBase with Bio::DB::GFF - extract sequence annotations en masse using this Perl module

Miscellaneous

1. Linking To WormBase
2. Converting Coordinates between releases
3. WormBase Identifiers - A quick guide to WormBase object identifiers