Difference between revisions of "WBConfCall 2021.01.07-Agenda and Minutes"
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= Help Desk = | = Help Desk = | ||
| − | * Requesting comprehensive TE data set: https://github.com/WormBase/website/issues/8041 | + | * Requesting comprehensive TE data set: https://github.com/WormBase/website/issues/8041 - HX going to work with them. Ticket updated [PD] |
| − | * lncRNA genes in C. elegans: https://github.com/WormBase/website/issues/8042 | + | * lncRNA genes in C. elegans: https://github.com/WormBase/website/issues/8042 - Corresponding author has replied and CC'd person with the data for us. Ticket updated [PD] |
| + | * The following is the Overview for the gene egl-1 (gene description): https://github.com/WormBase/website/issues/8008 - just checking in if Ranjana got back to the user | ||
| + | * Gene production information (gpi) file for WS279 has lost UniProtKB mappings for some WB protein identifiers [https://github.com/WormBase/website/issues/8031 #8031] - need to re-sync the WB ftp site - Thanks! | ||
| − | = Agenda = | + | = Agenda and Minutes= |
| − | * Biomart webinar: Monday Jan 11th, 8 am Pacific - Faye will present, | + | * Biomart webinar: Monday Jan 11th, 8 am Pacific - Faye will present, Ranjana will host, Daniela and Karen will monitor the chat |
| + | * Build 280 has commenced, follow #build280 slack channel for updates | ||
== Variation First Pass == | == Variation First Pass == | ||
| − | * Pipeline is up and running, sending out emails to variation-first-pass-group@wormbase.org | + | * Pipeline is up and running, sending out emails to variation-first-pass-group@wormbase.org - changed to no-email option as requested [PD] |
| − | * Need to add outreach@wormbase.org to the vfp google group | + | * Need to add outreach@wormbase.org to the vfp google group - added by Magz |
| + | * as soon as we start evaluating the results we will continue with Hinxton to improve the pipeline | ||
| − | = | + | == Alliance Disease WG == |
| + | * The disease WG will split into 2 subgroups | ||
| + | * Someone from Hinxton should be on the Disease alliance subgroup for the allele discussion | ||
| + | * Allele data model is different than other MODs. Need to consolidate. | ||
| + | * might have to a migrate to a new way of thinking and create data models that are more accommodating. A minimal model might not fit all | ||
| + | * Cindy will contact top management | ||
| + | * Madga will try to join the call and will follow up with Cindy | ||
| + | |||
| + | == Neural Network (NN) == | ||
| + | * Michael Muller changed the SVM results to NN | ||
| + | * Does Hinxton use the curation status form? only Gary W | ||
| + | * How is Hinxton notified about SVM results? email | ||
| + | * Hinxton will take a look at this and will get back to Caltech | ||
| + | |||
| + | == Alliance UI == | ||
| + | * Need of organism specific pages | ||
| + | * Anyone interested in designing the landing pages? Todd will help with this | ||
| + | |||
| + | == Parasite == | ||
| + | * Has anyone been in touch with the planarian community? | ||
| + | * Kevin talked with Jochen Rink about extending parasite to other taxa but the planarian specific databases (PlanMine) might be more appropriate | ||
| + | * We can think on onboarding them as another Alliance member | ||
Latest revision as of 17:22, 7 January 2021
Contents
Help Desk
- Requesting comprehensive TE data set: https://github.com/WormBase/website/issues/8041 - HX going to work with them. Ticket updated [PD]
- lncRNA genes in C. elegans: https://github.com/WormBase/website/issues/8042 - Corresponding author has replied and CC'd person with the data for us. Ticket updated [PD]
- The following is the Overview for the gene egl-1 (gene description): https://github.com/WormBase/website/issues/8008 - just checking in if Ranjana got back to the user
- Gene production information (gpi) file for WS279 has lost UniProtKB mappings for some WB protein identifiers #8031 - need to re-sync the WB ftp site - Thanks!
Agenda and Minutes
- Biomart webinar: Monday Jan 11th, 8 am Pacific - Faye will present, Ranjana will host, Daniela and Karen will monitor the chat
- Build 280 has commenced, follow #build280 slack channel for updates
Variation First Pass
- Pipeline is up and running, sending out emails to variation-first-pass-group@wormbase.org - changed to no-email option as requested [PD]
- Need to add outreach@wormbase.org to the vfp google group - added by Magz
- as soon as we start evaluating the results we will continue with Hinxton to improve the pipeline
Alliance Disease WG
- The disease WG will split into 2 subgroups
- Someone from Hinxton should be on the Disease alliance subgroup for the allele discussion
- Allele data model is different than other MODs. Need to consolidate.
- might have to a migrate to a new way of thinking and create data models that are more accommodating. A minimal model might not fit all
- Cindy will contact top management
- Madga will try to join the call and will follow up with Cindy
Neural Network (NN)
- Michael Muller changed the SVM results to NN
- Does Hinxton use the curation status form? only Gary W
- How is Hinxton notified about SVM results? email
- Hinxton will take a look at this and will get back to Caltech
Alliance UI
- Need of organism specific pages
- Anyone interested in designing the landing pages? Todd will help with this
Parasite
- Has anyone been in touch with the planarian community?
- Kevin talked with Jochen Rink about extending parasite to other taxa but the planarian specific databases (PlanMine) might be more appropriate
- We can think on onboarding them as another Alliance member
