Difference between revisions of "WebDev 2009.09.16-Agenda and Minutes"
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== 1. Administration update (Todd; 10 minutes) == | == 1. Administration update (Todd; 10 minutes) == | ||
+ | |||
+ | - Finished the NAR database paper for WB | ||
+ | - Working on Caltach mirror | ||
+ | - Working on WS205 frozen release | ||
== 2. WS206 development update (Norie; 10 minutes) == | == 2. WS206 development update (Norie; 10 minutes) == | ||
+ | |||
+ | - Discussed enhancements to various phenotype data displays with JF | ||
+ | - Completed gene page data table item; testing. Working on the other 2. | ||
+ | - B. malayi, M. hapla, M. Incognita genomes up in WB GBrowse, need stakeholder evaluation, examples in the correct tier to emulate | ||
+ | - Preping WB tutorial for AC, and Shirley | ||
== 3. modENCODE migration status (Abigail; 10 minutes) == | == 3. modENCODE migration status (Abigail; 10 minutes) == | ||
+ | |||
+ | - Good progress on bringing in ModENCODE data into WB | ||
+ | - GFF3 2 GFF2 coding to get gbrowse working | ||
+ | - Streamlining process; TH: need to get data in bulk from Berkeley. | ||
+ | - TH:Versioning? How do we handle? Remapping periodically to versions of each genome. Via date? | ||
+ | - Zheng has a script for download via URLs(?). Has suggestions, will send URL to conference call list. | ||
+ | - Action item: Figure out a way to get data in bulk. Non-priviledge rsync? NB: Mark has experience with this. | ||
+ | - TH: Set up so that data for WB on site same day as release. | ||
+ | - Discussion on datahandling with Sanger to be initiated ASAP | ||
== 4. Issue tracker overview (Todd; 10 minutes) == | == 4. Issue tracker overview (Todd; 10 minutes) == | ||
− | http://bitbucket.org/tharris/wormbase | + | - http://bitbucket.org/tharris/wormbase |
+ | - postphone till tomorrow | ||
+ | |||
+ | == 5. WormMart update status (Zheng; 10 minutes) == | ||
+ | |||
+ | - WormMart 202 interface done; Will start with WS205 | ||
+ | - URL: | ||
+ | - tested for data integrity; checking some menus | ||
+ | - will discuss with Biomart folks re: hosting service; preferably they will host it. | ||
+ | - Biomart folks prefer we host our data in OICR server. | ||
− | == | + | == 6. Open Table == |
Latest revision as of 15:45, 16 September 2009
Contents
Agenda
1. Administration update (Todd; 10 minutes)
- Finished the NAR database paper for WB - Working on Caltach mirror - Working on WS205 frozen release
2. WS206 development update (Norie; 10 minutes)
- Discussed enhancements to various phenotype data displays with JF - Completed gene page data table item; testing. Working on the other 2. - B. malayi, M. hapla, M. Incognita genomes up in WB GBrowse, need stakeholder evaluation, examples in the correct tier to emulate - Preping WB tutorial for AC, and Shirley
3. modENCODE migration status (Abigail; 10 minutes)
- Good progress on bringing in ModENCODE data into WB - GFF3 2 GFF2 coding to get gbrowse working - Streamlining process; TH: need to get data in bulk from Berkeley. - TH:Versioning? How do we handle? Remapping periodically to versions of each genome. Via date? - Zheng has a script for download via URLs(?). Has suggestions, will send URL to conference call list. - Action item: Figure out a way to get data in bulk. Non-priviledge rsync? NB: Mark has experience with this. - TH: Set up so that data for WB on site same day as release. - Discussion on datahandling with Sanger to be initiated ASAP
4. Issue tracker overview (Todd; 10 minutes)
- http://bitbucket.org/tharris/wormbase - postphone till tomorrow
5. WormMart update status (Zheng; 10 minutes)
- WormMart 202 interface done; Will start with WS205 - URL: - tested for data integrity; checking some menus - will discuss with Biomart folks re: hosting service; preferably they will host it. - Biomart folks prefer we host our data in OICR server.