WebDev 2009.12.16-Agenda and Minutes

Agenda

1. Minutes from 2009.12.09

• Goals for SAB -- GB2; tier2/3 support; new system demo

2. Administrative Update (Todd; 10 minutes)

• WS209 deadline
• Send summary of changes made via email
• Server issues - variation summa on production -- upgraded MySQL to 5.1

3. WS209 build status (Norie; 10 minutes)

• Clustal: stick with current version in production
  • WS209 still has markup; WS210 will not.
• Updated disease search
  • NdlC will check if it is ready to go live with WS209
• BLAST and GFF compile

4. Discuss GB2 issues and status (all; 10 minutes)

image map working examples: http://dev.wormbase.org:9004/db/gene/gene?name=WBGene00006763;class=Gene

• http://dev.wormbase.org:9004/db/gene/variation?name=e1196;class=Variation

• Progress made, things look nicer: 1.9971
• AC working on: track standardization; upload and share tracks; details and analysis issues
• Names from data source
• Links for summa pages

modENCODE data

• bringing it in

XS:

• inline images working
• to commit development updates

TH:

• production testing for GB2 items

5. Tier II/III matrix (all; 10 minutes)

• Tier II/Tier III matrix

Matrix populating assignments:

Find gaps in the information vis-a-vis CE

Norie:

• B. malayi
• C. brenneri
• C. briggsae

Xiaoqi:

• C. japonica
• C. remanei
• H. contortus

Todd:

• M. hapla
• M. incognita
• P. pacificus

Physical map

• might retire this
• TH to look in more details
• working in GB1 (AC)