WebDev 2009.08.12-Agenda and Minutes

Administrative Update (Todd; 10 minutes)

Minutes reviewed

• Update:
  • update to production nodes to WS204 smooth
  • modification to address challenges with CentOS - using NFS, distributed logging
  • review CSHL current hardware with PV and planning maintenance -- most will be allowed to "die out"

Describe WS205 development status (Norie; 5 minutes)

• Icognita
  • Blast/BLAT built (working on interface)
  • Building the GBrowse database for incognita

Development checklist (Norie)

http://www.wormbase.org/wiki/index.php/Release_Schedule#Post_Compile_Check_Matrix

TH: Maybe turn it into a template? Or at least its own page then copy and paste for each release.

modENCODE status update (Marc, Zheng; 10 minutes)

• Mark: 8-9 data track coming for Loeb data
• Wiggle files for some data discussed (chip-chip?)
• Script created sometime ago to turn data to binary format (by LS?)
• Ant and TH working to strategy to move data to WormBase
• For trial, Most mature dataset? -> from 2007 Nature paper, dosage compensation data
• TH: recommend trial with above data to solidify workflow...
• Mark to email number details to TH

Define WormMart go-live date (Zheng and Todd; 10 minutes)

• site - http://ls2.res.oicr.on.ca:9010
  • not available outside firewall
  • currently has raw web interface; dramatically diff from WB's
  • Discussion with Will indicated need to change interface to mature format (WB's), 2/b done manually
  • ZZ updating interface currently to be more user friendly
  • discussion with biomart programmer ongoing
  • need 1-2 wks worth of work
  • needs list of columns to be included to expedite work