Data mining:WormMart:Example 1
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Jump to navigationJump to searchExample 1: List all synonyms for the following genes; bli-1, egl-43, lag-1
- Start a new WormMart query: [HERE].
- On initial page;
- Select the latest database release,
- Select the Gene dataset,
- The <count> button on the top left of the page will report the number of genes in the dataset.
- Click the Filters link in the navigation panel on the left of the page;
- Expand the Identification section by clicking on it,
- Enable the Limit to Gene ID(s) of Type - Public/CGC Name filter,
- Paste the gene IDs bli-1, egl-43, lag-1 into the text box,
- Click <count> to see the number of genes selected,
- Click the Attributes link on the navigation panel,
- Expand the Identification section;
- Enable the Gene Public Name and Sequence Names (CDS) (merged) attributes.
- Click the <Results> button, which will load the results as shown on this [HERE].
- Note that the gene synonyms in the export are combined in a single table cell. To get a row per synonym rather than a row per gene;
- Return to the Attributes page,
- Disable the Sequence Names (CDS) (merged) attribute,
- Enable the Sequence Names (CDS) attribute,
- Click the <Results> button, which will load the results as shown on this [HERE].