Difference between revisions of "WormMine"
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− | == | + | ==Data contained in WormMine== |
This lists all data sources contained in WormMine | This lists all data sources contained in WormMine | ||
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− | == | + | ==Understanding our model== |
− | == | + | ==Account management== |
− | == | + | ==Using query builder== |
− | == | + | ==Creating templates== |
− | == | + | ==Creating lists== |
− | == | + | ==Creating widgets== |
Revision as of 20:23, 2 May 2013
Page stubs:
Contents
Data contained in WormMine
This lists all data sources contained in WormMine
Source | Description | Source | Species | Data mapping |
---|---|---|---|---|
GO | Ontology terms and relationships comprising GO | GO project website. | N/A | |
GO Annotations | Relationships between Genes and GO | GO project website. | Caenorhabditis elegans | |
Genomic sequences | Fasta DNA sequences | WormBase FTP | Caenorhabditis elegans | |
Protein sequences | Fasta peptide sequences | WormBase FTP | Caenorhabditis elegans | |
Gene locations | Gene chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
Transcript locations | Transcript chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
CDS locations | CDS chromosomal coordinates | WormBase FTP GFF3 | Caenorhabditis elegans | |
Gene metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
Transcript metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
CDS metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
Variation metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
Protein metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
Phenotype metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
Expression Pattern metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
Anatomy Term metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
Expression Cluster metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |
Life Stage metadata | Select fields extracted from Ace | AceDB XML dump | All in AceDB | LINK |