WormBase SAB Meeting

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WormBase_Consortium Scientific Advisory Board Meeting

Caltechlogo.gif
California Institute of Technology, January 27-29, 2013

Advisors list

Sunday 27th Jan – Pre-Meeting (WormBase central)

(Advisory Board not required to attend this session)

  • WormBase ParaSite
  • Revive GFF3 production/testing
  • Representation of multiple assemblies for a single species (on web-site and FTP site)
  • Mechanism to stage/review changes to static content without immediately publishing it to live site
  • Future web-site features
    • Incremental updates
    • Data that we produce that cannot currently be viewed on web-site
      • Comparative genomics (multiple alignments, gene trees)

Monday 28th Jan

9:00 - 9:15 Overview

  • Introduction: Where we are, grant status, etc - (Paul Sternberg; 15 min)

9:15 - 10:30 Website / User interface

  • Site introduction; usage; web team accomplishments; objectives and milestones. (Todd; 20 minutes)
  • Tour of the new website (Abby; 20 minutes)
  • Intermine introduction, status, and goals (JD; 15 minutes)

10:30 - 10:45 BREAK

10:45 - 12:15 Sequence analysis and curation

  • Coping with the deluge of nematode sequence data (Kevin; 20 mins)
  • Sequence curation - current status and future plans (Paul; 15 mins)
  • Transcriptomics data in WormBase
    • RNASeq alignment and annotation pipeline (Gary W; 10 mins)
    • SPELL (Wen; 10 mins)
  • Annotation of Brugia malayi - a pilot study for future parasitologist community collaborations (Michael; 15-20 mins)

=== 12:15 - 13:30 LUNCH === Morgan Library (second floor of Kerckhoff)

13:30 - 16:15 Literature curation

  • Literature curation workflow and tools (50)
  • Towards Integrated Phenotype Curation (alleles, RNAi, transgenes, interactions, GO (30)
  • Gene expression and regulation: Transcriptional Networks (Xioadong, Daniela)
  • Interactions (20)
  • GO (20)
  • Cell Function (10)
  • Processes and pathways (20)
  • Transcriptional Networks
  • Human Relevance - Orthologies, Disease and Drugs

16:15 - 16:30 BREAK

16:30 - 17:30 Other topics

  • Revisiting tools with respect to Community Annotation (40)
    • Pathways [Karen]
    • Concise descriptions [Kimberly, Ranjana]
    • Gene models (Kevin; 5 mins)
  • Plans for retirement of the Acedb (Kevin/Todd; 15 mins)

Tuesday 29th Jan

8:30 – 9:00 Advisors breakfast

9:30 – 12:00 Advisors summary report

12:00 – 13:00 LUNCH

13:00 – 15:00 Post ABM Discussion

Prior Meetings

2011 SAB Meeting