Difference between revisions of "WormBase SAB Meeting"
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(→10:45 - 12:15 Sequence analysis and curation: will be covering elements from multiple species in the curation talk, not just elegans.) |
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* Coping with the deluge of nematode sequence data (Kevin; 20 mins) | * Coping with the deluge of nematode sequence data (Kevin; 20 mins) | ||
− | * | + | * Sequence curation - current status and future plans (Paul; 15 mins) |
* Transcriptomics data in WormBase | * Transcriptomics data in WormBase | ||
** RNASeq alignment and annotation pipeline (Gary W; 10 mins) | ** RNASeq alignment and annotation pipeline (Gary W; 10 mins) |
Revision as of 11:12, 24 January 2013
WormBase_Consortium Scientific Advisory Board Meeting
California Institute of Technology, January 27-29, 2013
Contents
Advisors list
Sunday 27th Jan – Pre-Meeting (WormBase central)
(Advisory Board not required to attend this session)
- Revive GFF3 production/testing
- Representation of multiple assemblies for a single species (on web-site and FTP site)
- Mechanism to stage/review changes to static content without immediately publishing it to live site
- Future web-site features
- Incremental updates
- Data that we produce that cannot currently be viewed on web-site
- Multiple and pairwise genomic alignments
- Nematode gene trees
Monday 28th Jan
9:00 - 9:15 Overview
- Introduction: Where we are, grant status, etc - (Paul Sternberg; 15 min)
9:15 - 10:30 Website / User interface
- Site introduction; usage; web team accomplishments; objectives and milestones. (Todd; 20 minutes)
- Tour of the new website (Abby; 20 minutes)
- Intermine introduction, status, and goals (JD; 15 minutes)
10:30 - 10:45 BREAK
10:45 - 12:15 Sequence analysis and curation
- Coping with the deluge of nematode sequence data (Kevin; 20 mins)
- Sequence curation - current status and future plans (Paul; 15 mins)
- Transcriptomics data in WormBase
- RNASeq alignment and annotation pipeline (Gary W; 10 mins)
- SPELL (Wen; 10 mins)
- Annotation of Brugia malayi - a pilot study for future parasitologist community collaborations (Michael; 15-20 mins)
12:15 - 13:30 LUNCH
13:30 - 16:15 Literature curation
- Literature curation workflow and tools (50)
- Towards Integrated Phenotype Curation (alleles, RNAi, transgenes, interactions, GO (30)
- Gene expression and regulation: Transcriptional Networks (Xioadong, Daniela)
- Interactions (20)
- GO (20)
- Cell Function (10)
- Processes and pathways (20)
- Transcriptional Networks
- Human Relevance - Orthologies, Disease and Drugs
16:15 - 16:30 BREAK
16:30 - 17:30 Other topics
- Revisiting tools with respect to Community Annotation (40)
- Pathways [Karen]
- Concise descriptions [Kimberly, Ranjana]
- Gene models (Kevin; 5 mins)
- Plans for retirement of the Acedb (Kevin/Todd; 15 mins)