Difference between revisions of "WormBase SAB Meeting"
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==Thursday 3rd Feb – Millikan Board Room== | ==Thursday 3rd Feb – Millikan Board Room== | ||
| − | <b>9:00 - 12:00:</b> | + | <b> |
| + | ===9:00 - 12:00:Website, UI, Build, Orthology=== | ||
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* Introduction: Where we are; Hinxton Reorganization - Paul Sternberg (15 min) | * Introduction: Where we are; Hinxton Reorganization - Paul Sternberg (15 min) | ||
| − | * Build | + | * Build process - Kevin Howe |
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| + | * New Website: | ||
* Tour of the new website (Abby; 30 minutes) | * Tour of the new website (Abby; 30 minutes) | ||
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* Genome Browser: | * Genome Browser: | ||
| − | * | + | * Site usage; introduction to the new site (Todd; 30 minutes) |
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| + | * Process and pathway curation and display | ||
<b> | <b> | ||
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===General Discussion=== | ===General Discussion=== | ||
| + | DISCUSSION TOPICS | ||
| + | Sequence curation manual versus RNA-seq; how do we automate creation of new isoforms | ||
| + | Handling EST-based and fragmented genomes | ||
| + | GBrowse: making it -seq friendly | ||
| + | Interaction browser: what shall we use? | ||
| + | Resequencing a standard N2 isolate | ||
</b> | </b> | ||
Revision as of 17:23, 18 January 2011
WormBase Scientific Advisory Board Meeting
Contents
Wednesday 2nd Feb – Pre-Meeting
(WormBase staff only)
6:30 – 18:00
Put right the World
Thursday 3rd Feb – Millikan Board Room
9:00 - 12:00:Website, UI, Build, Orthology
- Introduction: Where we are; Hinxton Reorganization - Paul Sternberg (15 min)
- Build process - Kevin Howe
- New Website:
- Tour of the new website (Abby; 30 minutes)
- Genome Browser:
- Site usage; introduction to the new site (Todd; 30 minutes)
- Process and pathway curation and display
13:00 – 15:30 Sequence curation and analysis, other nematodes
- C. elegans(+ Tier II) Manual curation and projects? - Paul D. (20 mins)
- Large scale datasets (curation/modENCODE) - Gary W. (30 mins)
- Tier II genome (re)submissions -
- Other genome analysis -
15:30 - Literature Curation
- Ontology Annotator : Juancarlos Chan
Possible topics:
- Gene Function Curation - concise descriptions (update on numbers, curation approach)
- Collaboration with other Databases/Projects - automation (ARRA), BioGRID, GO
General Discussion
DISCUSSION TOPICS
Sequence curation manual versus RNA-seq; how do we automate creation of new isoforms Handling EST-based and fragmented genomes GBrowse: making it -seq friendly Interaction browser: what shall we use? Resequencing a standard N2 isolate
- Coordination among sites
- Quality control
- Outreach
- Database migration community annotation
Friday 4th Feb – Millikan Board Room
8:30 – 9:00 Advisors breakfast
9:30 – 12:00 Advisors summary report
12:00 – 13:00 Lunch
13:00 – Discussion
Arrivals/Departures
Arrive
- Hinxton Crew - Pasadena Tuesday afternoon/evening?
Depart
- Hinxton Crew minus Michael - Pasadena Sunday before lunch?
- Michael P. - Pasadena Friday PM?
