Difference between revisions of "WormBase SAB Meeting"

From WormBaseWiki
Jump to navigationJump to search
(added new section on when people will be around.)
 
(228 intermediate revisions by 17 users not shown)
Line 1: Line 1:
'''2011 Scientific Advisory Board Meeting'''
 
== SAB Meeting 2011 ==
 
  
__TOC__
+
= Meeting list =
<center><b>
+
[[2018_Advisory_Board_Meeting | 2018 SAB Meeting]]
<font size="5" color="Blue">SAB 2011
 
  
California Institute of Technology, February 3rd - 4th
+
[[2016_Advisory_Board_Meeting | 2016 SAB Meeting]]
</font>
 
</b></center>
 
  
 +
[[2014_Advisory_Board_Meeting | 2014 SAB Meeting]]
  
==Wednesday 2nd Feb – Pre-Meeting==
+
[[2013_Advisory_Board_Meeting | 2013 SAB Meeting]]
  
<b>(WormBase staff only)
+
[[2011_Advisory_Board_Meeting | 2011 SAB Meeting]]
 
 
6:30 – 18:00</b>
 
 
 
Put right the World
 
 
 
 
 
==Thursday 3rd Feb – Millikan Board Room==
 
 
 
<b>9:00 - 12:00:</b>
 
 
 
* Introduction: Where we are; Hinxton Reorganization Paul Sternberg
 
 
 
* Build Process (+ models?) - Kevin Howe
 
 
 
* Site usage; introduction to the new site (Todd; 30 minutes)
 
 
 
* Tour of the new website (Abby; 30 minutes)   
 
 
 
* Process and pathway curation and display
 
 
 
 
 
 
 
DISCUSSION TOPICS
 
    Sequence curation manual versus RNA-seq; how do we automate creation of new isoforms
 
    Handling EST-based and fragmented genomes
 
    GBrowse: making it -seq friendly
 
    Interaction browser:  what shall we use?
 
 
 
 
 
BELOW IS still mostly 2008 SCHEDULE
 
 
 
 
 
<b>Morning: Website, UI, Build, Orthology</b>
 
 
 
* Introduction: Hinxton Reorganization Paul Sternberg
 
 
 
* New Website:
 
 
 
* Genome Browser:
 
 
 
* Build Process:
 
 
 
* Comparative Analysis:
 
 
 
* modENCODE & Chado migration
 
 
 
 
 
<b>13:00 – 15:30 Sequence curation and analysis, other nematodes</b>
 
 
 
* Introduction: John Spieth
 
 
 
* Curation Tool: Gary Williams
 
 
 
* Current methods and metrics:
 
 
 
* Briggsae curation and SNPS:
 
 
 
* Future curation:
 
 
 
 
 
<b>15:30 - Literature Curation</b>
 
 
 
* Textpresso-based Curation: Kimberly Van Auken
 
 
 
* Overview;Phenotype Curation: Gary Schindelman
 
 
 
* Generalizing Phenote: Juancarlos Chan
 
 
 
* Genetics: Mary Ann Tuli
 
 
 
* Cell-centric curation: Raymond Lee
 
 
 
* Gene Regulation: Xioadong Wang
 
 
 
 
 
<b>General Discussion</b>
 
 
 
* Coordination among sites
 
 
 
* Quality control
 
 
 
* Outreach
 
 
 
* Database migration community annotation
 
 
 
==Friday 4th Feb==
 
 
 
8:30 – 9:00 Advisors breakfast
 
 
 
9:30 – 12:00 Advisors summary report
 
 
 
12:00 – 13:00 Lunch
 
 
 
13:00 – Discussion
 
 
 
== Arrivals/Departures ==
 

Latest revision as of 12:39, 7 June 2018