Difference between revisions of "WormBase Model:Transgene"
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== Model == | == Model == | ||
<pre> | <pre> | ||
+ | /////////////////////////////////////////////////////////////////////////////// | ||
+ | //Transgene class from Wen Chen 12/00 | ||
+ | /////////////////////////////////////////////////////////////////////////////// | ||
+ | |||
+ | ?Transgene Summary UNIQUE ?Text //Searchable description of the transgene | ||
+ | Synonym ?Text //for alternative names | ||
+ | Driven_by Driven_by_gene ?Gene XREF Drives_transgene | ||
+ | Driven_by_construct ?Text //for artificial promoters | ||
+ | Reporter_product GFP | ||
+ | YFP //Added by Wen | ||
+ | CFP //Added by Wen | ||
+ | Venus //Added by Wen | ||
+ | DsRed //Added by Wen | ||
+ | mCherry //Added by Wen | ||
+ | RFP //Added by Wen | ||
+ | LacZ | ||
+ | Other_reporter ?Text | ||
+ | Gene ?Gene XREF Transgene_product Text | ||
+ | Isolation Author ?Author | ||
+ | Clone ?Clone XREF Transgene Text //injected clone conc. | ||
+ | Fragment Text Text //injected DNA fragment conc. | ||
+ | Injected_into_CGC_strain ?Strain | ||
+ | Injected_into Text // for strains not available in CGC | ||
+ | Integrated_by UNIQUE Gamma_ray | ||
+ | X_ray | ||
+ | Spontaneous | ||
+ | UV | ||
+ | Particle_bombardment | ||
+ | Not_integrated | ||
+ | Other_integration_method Text | ||
+ | Location ?Laboratory #Lab_Location //Which Labs have the transgene. | ||
+ | Strain ?Strain XREF Transgene //All strains in CGC with the transgene. | ||
+ | Map ?Map #Map_position | ||
+ | Map_evidence #Evidence //For wen - many papers refer to Transgene. This will allow curators to track which is used. | ||
+ | Mapping_data 2_point ?2_point_data | ||
+ | Multi_point ?Multi_pt_data | ||
+ | Phenotype ?Phenotype XREF Transgene #Phenotype_info // [2006-04-20 ar2] changed for Carols Phenotype changes | ||
+ | Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info //added by Wen to separate Not phenotype from real phenotypes | ||
+ | Rescue ?Gene XREF Rescued_by_Transgene ?Variation XREF Rescued_by_Transgene | ||
+ | Expr_pattern ?Expr_pattern XREF Transgene // Related Expr_pattern | ||
+ | Marker_for ?Text #Evidence //Marker Summary | ||
+ | Marked_rearrangement ?Rearrangement XREF By_transgene | ||
+ | Gene_regulation ?Gene_regulation XREF Transgene | ||
+ | Interactor ?Interaction | ||
+ | Reference ?Paper XREF Transgene // papers refered to the transgene. | ||
+ | Species UNIQUE ?Species // added by krb for consistency with other classes 021030 | ||
+ | Remark ?Text #Evidence // More comments on the transgene | ||
+ | Supporting_data Movie ?Movie XREF Transgene #Evidence | ||
+ | Picture ?Picture XREF Transgene #Evidence | ||
</pre> | </pre> | ||
== Proposed Changes == | == Proposed Changes == | ||
+ | ==Unused tags== | ||
+ | |||
+ | 2_point | ||
+ | |||
+ | Rescue | ||
+ | |||
+ | Supporting_data | ||
+ | |||
+ | Movie | ||
+ | |||
+ | Picture |
Revision as of 09:50, 5 October 2010
Curator Comments/Description
Model
/////////////////////////////////////////////////////////////////////////////// //Transgene class from Wen Chen 12/00 /////////////////////////////////////////////////////////////////////////////// ?Transgene Summary UNIQUE ?Text //Searchable description of the transgene Synonym ?Text //for alternative names Driven_by Driven_by_gene ?Gene XREF Drives_transgene Driven_by_construct ?Text //for artificial promoters Reporter_product GFP YFP //Added by Wen CFP //Added by Wen Venus //Added by Wen DsRed //Added by Wen mCherry //Added by Wen RFP //Added by Wen LacZ Other_reporter ?Text Gene ?Gene XREF Transgene_product Text Isolation Author ?Author Clone ?Clone XREF Transgene Text //injected clone conc. Fragment Text Text //injected DNA fragment conc. Injected_into_CGC_strain ?Strain Injected_into Text // for strains not available in CGC Integrated_by UNIQUE Gamma_ray X_ray Spontaneous UV Particle_bombardment Not_integrated Other_integration_method Text Location ?Laboratory #Lab_Location //Which Labs have the transgene. Strain ?Strain XREF Transgene //All strains in CGC with the transgene. Map ?Map #Map_position Map_evidence #Evidence //For wen - many papers refer to Transgene. This will allow curators to track which is used. Mapping_data 2_point ?2_point_data Multi_point ?Multi_pt_data Phenotype ?Phenotype XREF Transgene #Phenotype_info // [2006-04-20 ar2] changed for Carols Phenotype changes Phenotype_not_observed ?Phenotype XREF Not_in_Transgene #Phenotype_info //added by Wen to separate Not phenotype from real phenotypes Rescue ?Gene XREF Rescued_by_Transgene ?Variation XREF Rescued_by_Transgene Expr_pattern ?Expr_pattern XREF Transgene // Related Expr_pattern Marker_for ?Text #Evidence //Marker Summary Marked_rearrangement ?Rearrangement XREF By_transgene Gene_regulation ?Gene_regulation XREF Transgene Interactor ?Interaction Reference ?Paper XREF Transgene // papers refered to the transgene. Species UNIQUE ?Species // added by krb for consistency with other classes 021030 Remark ?Text #Evidence // More comments on the transgene Supporting_data Movie ?Movie XREF Transgene #Evidence Picture ?Picture XREF Transgene #Evidence
Proposed Changes
Unused tags
2_point
Rescue
Supporting_data
Movie
Picture