Difference between revisions of "WormBase Model:Transcript"
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− | Start_not_found #acedb magic tag | + | Start_not_found #acedb magic tag |
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− | GO_term | + | GO_term |
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− | Provisional_description | + | Provisional_description |
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− | Detailed_description | + | Detailed_description |
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− | Concise_description | + | Concise_description |
Revision as of 15:56, 9 August 2010
Curator Comments/Description
Model
/////////////////////////////////////////////////////////////////// // // ?Transcript class - krb 021126 // /////////////////////////////////////////////////////////////////// ?Transcript Evidence #Evidence SMap S_parent UNIQUE Sequence UNIQUE ?Sequence XREF Transcript Structure Source_exons Int UNIQUE Int DB_info DB_remark ?Text #Evidence // was missing from first draft of Transcript class krb Database ?Database ?Database_field UNIQUE ?Accession_number XREF Transcript Origin From_laboratory UNIQUE ?Laboratory // [020306 kj] Species UNIQUE ?Species // [020306 kj] Visible Gene ?Gene XREF Corresponding_transcript // for live transcripts Gene_history UNIQUE ?Gene XREF Corresponding_transcript_history // when Transcript is dead Variation ?Variation XREF Transcript // added to fit two alleles of RNA genes [021127 krb] Matching_cDNA ?Sequence XREF Matching_transcript #Evidence // to attach non-coding RNA genes to matching ESTs Corresponding_CDS UNIQUE ?CDS XREF Corresponding_transcript #Evidence // 1-2-1 relationships with coding genes Corresponding_PCR_product ?PCR_product XREF Overlaps_transcript Corresponding_oligo_set ?Oligo_set XREF Overlaps_transcript Reference ?Paper XREF Transcript // [020306 kj] RNAi_result ?RNAi XREF Transcript //was missing from model [021126 krb] GO_term ?GO_term XREF Transcript ?GO_code #Evidence // [030411 krb] Microarray_results ?Microarray_results XREF Transcript //added for Microarray_results Provisional_description ?Text #Evidence Detailed_description ?Text #Evidence Concise_description ?Text #Evidence Brief_identification UNIQUE Text // [020306 kj] Confidential_remark ?Text SAGE_tag ?SAGE_tag XREF Transcript #SAGE_mapping_info Remark ?Text #Evidence Properties Transcript UNIQUE mRNA UNIQUE Processed_mRNA Unprocessed_mRNA tRNA Type UNIQUE Text // ck1 [030926] krb Anticodon UNIQUE Text // rRNA UNIQUE Text snRNA UNIQUE Text snoRNA UNIQUE Text // [030102 krb] scRNA UNIQUE Text stRNA UNIQUE Text // [010723 dl] miRNA UNIQUE Text // [020306 kj] ncRNA UNIQUE Text // true non-coding RNAs snlRNA UNIQUE Text //small nuclear like u21RNA UNIQUE Text //21U-RNA Isoform #Evidence // Set if this is a RNA isoform Ignore #Evidence // Set for putative NMD targets which we do not want to see in wormrna Start_not_found // [020306 kj] End_not_found // [020306 kj] Associated_feature ?Feature XREF Associated_with_transcript #Evidence Method UNIQUE ?Method
Proposed Changes
Unised tags
Start_not_found #acedb magic tag GO_term Provisional_description Detailed_description Concise_description