Difference between revisions of "WormBase Model:Position Matrix"
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Sites_used UNIQUE Int | Sites_used UNIQUE Int | ||
Derived_from_matrix ?Position_Matrix | Derived_from_matrix ?Position_Matrix | ||
− | Bound_by_gene_product ?Gene XREF Product_binds_matrix #Evidence | + | Bound_by_gene_product ?Gene XREF Product_binds_matrix #Evidence //Addition by Gary Williams |
Remark ?Text #Evidence | Remark ?Text #Evidence | ||
</pre> | </pre> |
Revision as of 23:36, 22 November 2010
Curator Comments/Description
Model
//Position_Matrix class //General data model for known or inferred binding sites of transcription factors to DNA, accomodating either a straight position-frequency matrix (PFM), or a position-specific weight matrix ?Position_Matrix Description ?Text #Evidence Brief_id UNIQUE ?Text // Addition Xiaodong Type UNIQUE Frequency Weight Background_model Text UNIQUE Float Site_values Text UNIQUE Float REPEAT Threshold Float Associated_feature ?Feature XREF Associated_with_Position_Matrix #Evidence Sites_used UNIQUE Int Derived_from_matrix ?Position_Matrix Bound_by_gene_product ?Gene XREF Product_binds_matrix #Evidence //Addition by Gary Williams Remark ?Text #Evidence
Proposed Changes
Background_model
Threshold
Associated_feature
Bound_by_gene_product