Difference between revisions of "WormBase Model:Phenotype info"
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== Curator Comments/Description == | == Curator Comments/Description == | ||
+ | Usage hard to work out as tag counts don't work in hashes. | ||
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== Model == | == Model == | ||
<pre> | <pre> | ||
+ | //////////////////////////////////////////// | ||
+ | // | ||
+ | // ?Phenotype_info Class | ||
+ | // | ||
+ | //////////////////////////////////////////// | ||
+ | |||
+ | #Phenotype_info Paper_evidence ?Paper | ||
+ | Person_evidence ?Person | ||
+ | Curator_confirmed ?Person | ||
+ | Remark ?Text #Evidence // specific remarks about the phenotype | ||
+ | Quantity_description ?Text #Evidence //Remark to describe what quantity describes, below | ||
+ | Quantity UNIQUE Int UNIQUE Int #Evidence | ||
+ | Not #Evidence //This is being phased out but is needed for the next phase [06/08/10]. | ||
+ | Anatomy_term ?Anatomy_term #Evidence | ||
+ | Penetrance Incomplete Text #Evidence | ||
+ | Low Text #Evidence | ||
+ | High Text #Evidence | ||
+ | Complete Text #Evidence | ||
+ | Range UNIQUE Int UNIQUE Int #Evidence // Range of penetrance | ||
+ | Recessive #Evidence | ||
+ | Semi_dominant #Evidence | ||
+ | Dominant #Evidence | ||
+ | Haplo_insufficient #Evidence | ||
+ | Caused_by ?Gene #Evidence | ||
+ | Caused_by_other ?Text #Evidence | ||
+ | Loss_of_function UNIQUE Hypomorph #Evidence | ||
+ | Amorph #Evidence | ||
+ | Uncharacterised_loss_of_function #Evidence | ||
+ | Gain_of_function UNIQUE Dominant_negative #Evidence | ||
+ | Hypermorph #Evidence | ||
+ | Neomorph #Evidence | ||
+ | Uncharacterised_gain_of_function #Evidence | ||
+ | Other_allele_type UNIQUE Wild_type #Evidence | ||
+ | Isoallele #Evidence | ||
+ | Mixed #Evidence | ||
+ | Affected_by Molecule ?Molecule #Evidence // ?Molecule model Karen Yook | ||
+ | Temperature_sensitive Heat_sensitive Text #Evidence | ||
+ | Cold_sensitive Text #Evidence | ||
+ | Maternal UNIQUE Strictly_maternal #Evidence | ||
+ | With_maternal_effect #Evidence | ||
+ | Paternal #Evidence | ||
+ | Phenotype_assay Life_stage ?Life_stage #Evidence | ||
+ | Strain ?Strain #Evidence | ||
+ | Treatment ?Text #Evidence | ||
+ | Temperature ?Text #Evidence | ||
+ | Genotype ?Text #Evidence | ||
</pre> | </pre> |
Revision as of 08:32, 5 October 2010
Curator Comments/Description
Usage hard to work out as tag counts don't work in hashes.
Model
//////////////////////////////////////////// // // ?Phenotype_info Class // //////////////////////////////////////////// #Phenotype_info Paper_evidence ?Paper Person_evidence ?Person Curator_confirmed ?Person Remark ?Text #Evidence // specific remarks about the phenotype Quantity_description ?Text #Evidence //Remark to describe what quantity describes, below Quantity UNIQUE Int UNIQUE Int #Evidence Not #Evidence //This is being phased out but is needed for the next phase [06/08/10]. Anatomy_term ?Anatomy_term #Evidence Penetrance Incomplete Text #Evidence Low Text #Evidence High Text #Evidence Complete Text #Evidence Range UNIQUE Int UNIQUE Int #Evidence // Range of penetrance Recessive #Evidence Semi_dominant #Evidence Dominant #Evidence Haplo_insufficient #Evidence Caused_by ?Gene #Evidence Caused_by_other ?Text #Evidence Loss_of_function UNIQUE Hypomorph #Evidence Amorph #Evidence Uncharacterised_loss_of_function #Evidence Gain_of_function UNIQUE Dominant_negative #Evidence Hypermorph #Evidence Neomorph #Evidence Uncharacterised_gain_of_function #Evidence Other_allele_type UNIQUE Wild_type #Evidence Isoallele #Evidence Mixed #Evidence Affected_by Molecule ?Molecule #Evidence // ?Molecule model Karen Yook Temperature_sensitive Heat_sensitive Text #Evidence Cold_sensitive Text #Evidence Maternal UNIQUE Strictly_maternal #Evidence With_maternal_effect #Evidence Paternal #Evidence Phenotype_assay Life_stage ?Life_stage #Evidence Strain ?Strain #Evidence Treatment ?Text #Evidence Temperature ?Text #Evidence Genotype ?Text #Evidence