Difference between revisions of "WormBase Model:Mass spec experiment"
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== Curator Comments/Description == | == Curator Comments/Description == | ||
− | + | This gives details of a mass-spectrometry experiment and lists the peptides produced by that experiment. | |
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== Model == | == Model == | ||
<pre> | <pre> | ||
+ | ?Mass_spec_experiment Reference ?Paper XREF Mass_spec_experiment // Describes the experiment | ||
+ | Remark Text #Evidence | ||
+ | Laboratory ?Laboratory // use when a CGC-derived laboratory code is available, else ignore | ||
+ | Contact Person ?Person // use Person where possible, else use Author | ||
+ | Author ?Author | ||
+ | Origin Species UNIQUE ?Species | ||
+ | Strain UNIQUE ?Strain | ||
+ | Genotype ?Text // in many cases the proper strain name is not available, use this instead | ||
+ | Life_stage ?Life_stage | ||
+ | Anatomy_term ?Anatomy_term | ||
+ | Cell_type ?Cell | ||
+ | Sub_cellular_localization Text | ||
+ | Digestion UNIQUE Trypsin | ||
+ | Red_ALK | ||
+ | Ionisation_source UNIQUE MALDI | ||
+ | ESI | ||
+ | Instrumentation UNIQUE IonTrap | ||
+ | FT | ||
+ | QTOF | ||
+ | Database Text // database used to search for matches | ||
+ | Program Text // program used to match MS data against databases | ||
+ | Minimum_ion_proportion UNIQUE Float | ||
+ | Multiple_ambiguous_IDs_allowed | ||
+ | Minimum_peptide_length UNIQUE Int | ||
+ | False_discovery_rate UNIQUE Float // percentage | ||
+ | Mass_spec_peptide ?Mass_spec_peptide XREF Mass_spec_experiments // the resulting peptide data | ||
+ | |||
</pre> | </pre> | ||
== Proposed Changes == | == Proposed Changes == | ||
+ | |||
+ | |||
+ | === unused tags === | ||
+ | |||
+ | Laboratory | ||
+ | |||
+ | Author | ||
+ | |||
+ | Genotype | ||
+ | |||
+ | Anatomy_term | ||
+ | |||
+ | Cell_type | ||
+ | |||
+ | Minimum_ion_proportion | ||
+ | |||
+ | Minimum_peptide_length |
Latest revision as of 08:38, 17 August 2010
Curator Comments/Description
This gives details of a mass-spectrometry experiment and lists the peptides produced by that experiment.
Model
?Mass_spec_experiment Reference ?Paper XREF Mass_spec_experiment // Describes the experiment Remark Text #Evidence Laboratory ?Laboratory // use when a CGC-derived laboratory code is available, else ignore Contact Person ?Person // use Person where possible, else use Author Author ?Author Origin Species UNIQUE ?Species Strain UNIQUE ?Strain Genotype ?Text // in many cases the proper strain name is not available, use this instead Life_stage ?Life_stage Anatomy_term ?Anatomy_term Cell_type ?Cell Sub_cellular_localization Text Digestion UNIQUE Trypsin Red_ALK Ionisation_source UNIQUE MALDI ESI Instrumentation UNIQUE IonTrap FT QTOF Database Text // database used to search for matches Program Text // program used to match MS data against databases Minimum_ion_proportion UNIQUE Float Multiple_ambiguous_IDs_allowed Minimum_peptide_length UNIQUE Int False_discovery_rate UNIQUE Float // percentage Mass_spec_peptide ?Mass_spec_peptide XREF Mass_spec_experiments // the resulting peptide data
Proposed Changes
unused tags
Laboratory
Author
Genotype
Anatomy_term
Cell_type
Minimum_ion_proportion
Minimum_peptide_length