Difference between revisions of "WormBase Literature Curation Workflow"
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| align="center" style="background:#f0f0f0;"|'''Extraction Methods''' | | align="center" style="background:#f0f0f0;"|'''Extraction Methods''' | ||
| align="center" style="background:#f0f0f0;"|'''Entities Involved''' | | align="center" style="background:#f0f0f0;"|'''Entities Involved''' | ||
| − | | align="center" style="background:#f0f0f0;"|'''Ontologies | + | | align="center" style="background:#f0f0f0;"|'''Ontologies, Controlled Vocabularies, or Identifiers Used''' |
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|Genes Studied||Genes for which experimental results are reported are linked to the publication||n/a - applies to all publications||Perl script (abstract only), Manual curation||Genes and proteins||WormBase Gene IDs, CGC (Caenorhabditis Genetics Center) names, Sequence names, Other names (synonyms) | |Genes Studied||Genes for which experimental results are reported are linked to the publication||n/a - applies to all publications||Perl script (abstract only), Manual curation||Genes and proteins||WormBase Gene IDs, CGC (Caenorhabditis Genetics Center) names, Sequence names, Other names (synonyms) | ||
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| − | |Genes Cloned||Molecular characterization of a locus||SVM (variation sequence change), Manual curation||Manual curation||Genes and sequences|| | + | |Genes Cloned||Molecular characterization of a locus||SVM (variation sequence change), Manual curation||Manual curation||Genes and sequences||WormBase Gene IDs, CGC (Caenorhabditis Genetics Center) names, Sequence names, Other names (synonyms) |
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|} | |} | ||
Revision as of 19:51, 16 December 2011
WormBase Data Types Curated and Curation Methods
| Data Types Curated from the Literature | Data Type Description | Paper Flagging Methods (triage) | Extraction Methods | Entities Involved | Ontologies, Controlled Vocabularies, or Identifiers Used |
| Genes Studied | Genes for which experimental results are reported are linked to the publication | n/a - applies to all publications | Perl script (abstract only), Manual curation | Genes and proteins | WormBase Gene IDs, CGC (Caenorhabditis Genetics Center) names, Sequence names, Other names (synonyms) |
| Genes Cloned | Molecular characterization of a locus | SVM (variation sequence change), Manual curation | Manual curation | Genes and sequences | WormBase Gene IDs, CGC (Caenorhabditis Genetics Center) names, Sequence names, Other names (synonyms) |
