WormBase-Caltech Weekly Calls
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Contents
Previous Years
GoToMeeting link: https://www.gotomeet.me/wormbase1
2020 Meetings
May 13, 2020
Genotype class
- Have 27 genotypes in the genotype OA, dumper and test .ace file ready
- Will test ace file in citace as soon as we get the new models file, can also send to Paul D., in advance to test
- Disease OA annotations now converted to the newly created genotypes where needed
- Need to work on disease dumper changes next
May 7, 2020
Alliance COVID Page
- Available on stage
- Textpresso for Coronavirus up for testing
SimpleMine at Alliance
- Still some confusion about what it is
- Will try to help clarify on PI meeting on Friday
Development environment for Alliance work
- Raymond and Juancarlos have been working on
- Existing hardware is strained; set up virtual machine
- Still some technical issues
Open Publishing Festival
- Later this month
- Micropublications involved
- Organized by the Collaborative Knowledge Foundation
- Will involve publishers of books, journals, etc.
- Will have a MOD-focused event, would be good to have WB curators participate/attend
- Open to all
Genotype class
- Ranjana finished populating the Genotype OA with genotypes needed for disease curation
- Will need to keep in mind that we will have a mapping pipeline to determine which genes are involved for a variation
- There could end up being a discrepancy between an original or published name of a genotype and the components that are inferred by WormBase
- Would be good to be clear/transparent about which components were automatically inferred
WS277/278
- Pipelines are pushed back by about 14 days/2 weeks